View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_41 (Length: 332)

Name: NF1739_low_41
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_41
NF1739_low_41
[»] chr4 (1 HSPs)
chr4 (226-312)||(4737196-4737282)
[»] chr8 (2 HSPs)
chr8 (80-138)||(2806529-2806587)
chr8 (139-171)||(2806607-2806639)
[»] chr5 (2 HSPs)
chr5 (139-171)||(34154339-34154371)
chr5 (60-94)||(34154297-34154331)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 4737282 - 4737196
Alignment:
Q  226 caattagtcccctttattgcccagttgttttgaaagcatgtggacagtcaaaagtcccaacatagaattcaagatgaaatttaatta 312  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4737282 caattagtcccctttattgcccatttgttttgaaagcatgtggacagtgaaaagtcccaacatagaattcaagatgaaatttaatta 4737196  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 2806529 - 2806587
Alignment:
Q  80 ctgtataccctattaattaggtgtgaccaacaaattctaccaagtaaataggccacgat 138  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2806529 ctgtatagcatattaattaggtgtgaccaacaaactctaccaagtaaataggccacgat 2806587  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 2806607 - 2806639
Alignment:
Q  139 gctaaataacttggtcaaaagaaaacggtttag 171  Q
    |||||||||||||||||||||||||||||||||    
T  2806607 gctaaataacttggtcaaaagaaaacggtttag 2806639  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 34154339 - 34154371
Alignment:
Q  139 gctaaataacttggtcaaaagaaaacggtttag 171  Q
    |||||||||||||||||||||||||||||||||    
T  34154339 gctaaataacttggtcaaaagaaaacggtttag 34154371  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 34154297 - 34154331
Alignment:
Q  60 aatataataacgttgcaaaactgtataccctatta 94  Q
    |||||||||||||||||||||||||| ||||||||    
T  34154297 aatataataacgttgcaaaactgtatgccctatta 34154331  T

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