View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_44 (Length: 323)
Name: NF1739_low_44
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 10676709 - 10676415
Alignment:
| Q |
10 |
catcatcagagttgtacgaacgagaaaggtggcacccccacttctaccgtactgaactatatatgaagacattagtttgtaacgagcaacacttctatgg |
109 |
Q |
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| T |
10676709 |
catcatcagagttgtacgaacgagaaaggtggcacccccacttctaccgtactgaactatatatgaagacattagtttgtaacgagcaacacttctatgg |
10676610 |
T |
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| Q |
110 |
tcacaagcacaaattttttcgatttagcaacacttctaaatccaaaacatttgtgtttgtgaccataaaagtctagctcagtttgtaagtcattttttat |
209 |
Q |
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| T |
10676609 |
tcacaagcacaaaaattttcgatttaccaacacttctaaatccaaaacatttgtgtttgtgaccataaaagtcttgctcagtttgtaagtcattttttat |
10676510 |
T |
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| Q |
210 |
gtcaacaaaaaacctataacacgtcaaaactgccactatatctaagcgaccctttgnnnnnnnnnnnngttaatccattgagatttaagagttctacat |
308 |
Q |
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| T |
10676509 |
gtcaacaaaaaacctataacacgtcaaaactgccactatatctaagcgaccctttg----tatatatagttaatccattgagatttaagagttctacat |
10676415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 10672902 - 10672815
Alignment:
| Q |
153 |
aaaacatttgtgtttgtgaccataaaagtctagctcagtttgtaagtcattttttatgtc---aacaaaaaacctataacacgtcaaaa |
238 |
Q |
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| T |
10672902 |
aaaacatttatgtttgtgac-atataagtctagctatgtttgtaagtcattttttatgtcaaaaaaaaaaaacctataacacgtaaaaa |
10672815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 10673560 - 10673524
Alignment:
| Q |
79 |
cattagtttgtaacgagcaacacttctatggtcacaa |
115 |
Q |
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| T |
10673560 |
cattagtttgtaaggtgcaacacttctatggtcacaa |
10673524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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