View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_46 (Length: 314)
Name: NF1739_low_46
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 34771706 - 34771420
Alignment:
| Q |
12 |
atgaacatgatgaacatgaacatgatcatgaaatctaaacacattccaacnnnnnnnncatcaacaatgaaatgtaagaattgattgaagatgaaaataa |
111 |
Q |
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| T |
34771706 |
atgaacatgatgaacatgaacatgatcatgaaatctaaacacattccaacaaaaaaaacatcaacaatgaaatgtaagaattgattgaagatgaaaataa |
34771607 |
T |
|
| Q |
112 |
taaataggtaacaaccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771606 |
taaataggtaacaaccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatga |
34771507 |
T |
|
| Q |
212 |
atgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaagaaaaagaggatcaagcaaaaatagatataaatggattttt |
298 |
Q |
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| T |
34771506 |
atgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaagaaaaagaggatcaagcaaaaatagatataaatggattttt |
34771420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 34781161 - 34781083
Alignment:
| Q |
126 |
ccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaa-aaaacagaagagtgtgaatgtgaatat |
203 |
Q |
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| T |
34781161 |
ccatcccaaatattagacatttttatcagaagttgaagagttcaaaagcaaaaaaacagaagaatgtaaatgtgaatat |
34781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 34780958 - 34780913
Alignment:
| Q |
253 |
agtaagaaaaagaggatcaagcaaaaatagatataaatggattttt |
298 |
Q |
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| T |
34780958 |
agtaagaaaaagaggatcatgcaaaaatagatataaatggattttt |
34780913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 34795806 - 34795761
Alignment:
| Q |
253 |
agtaagaaaaagaggatcaagcaaaaatagatataaatggattttt |
298 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34795806 |
agtaagaaaaagaggatcatgcaaaaatagatataaatggattttt |
34795761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 34796000 - 34795968
Alignment:
| Q |
189 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
221 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
34796000 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
34795968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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