View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_47 (Length: 312)
Name: NF1739_low_47
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 90 - 295
Target Start/End: Complemental strand, 2429865 - 2429660
Alignment:
| Q |
90 |
gagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttccacata |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429865 |
gagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttccacata |
2429766 |
T |
|
| Q |
190 |
cacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccggatccgc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429765 |
cacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccggatccgc |
2429666 |
T |
|
| Q |
290 |
ttatat |
295 |
Q |
| |
|
|||||| |
|
|
| T |
2429665 |
ttatat |
2429660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2516058 - 2516309
Alignment:
| Q |
1 |
tggtataaagacagctaaactttctagaaaggatttgaaaaaattgacaacataacaatacataggaaaaacaaatgctttctattcacgagcaacaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516058 |
tggtataaagacagctaaactttctagaaaagatttgaaaaaattgacaacataacaaaacataggaaaaacaaatgctttctattcacgagcaacaaca |
2516157 |
T |
|
| Q |
101 |
accacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttccacatacacaacctttc |
200 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2516158 |
accacttgtttaccaacattgcgaccgctaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttccacatacacaaccctac |
2516257 |
T |
|
| Q |
201 |
cttctcttataagaggcagcataaactccaagaattttgtataaagatgata |
252 |
Q |
| |
|
||||||||||| ||||||| | |||||| |||||||| || || |||||||| |
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|
| T |
2516258 |
cttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgata |
2516309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2496484 - 2496721
Alignment:
| Q |
1 |
tggtataaagacagctaaactttctagaaaggatttgaaaa-aattgacaacataacaatacataggaaaaacaaatgctttctattcacgagcaacaac |
99 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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|
| T |
2496484 |
tggtacaaagacaactaaacattctataaaagatttgaaaaaaattgacaacataacaatacataggaaaagcaaatgctttctattcccgagcaacgac |
2496583 |
T |
|
| Q |
100 |
aaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttccacatacacaaccttt |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||| | || |||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |
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|
| T |
2496584 |
aaccacttgtttaccaacattgcgaccactatataggccaatcaaggctgcagggccattctcaagaccctcagttatgtcttcaacatacacaatcttc |
2496683 |
T |
|
| Q |
200 |
ccttctcttataagaggcagcataaactccaagaattt |
237 |
Q |
| |
|
|| ||||| ||| |||| || | ||||||||| ||||| |
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|
| T |
2496684 |
ccatctctgatatgagggaggacaaactccaacaattt |
2496721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 84 - 295
Target Start/End: Complemental strand, 2436214 - 2436003
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| |||||||| | || |||| ||| || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
2436214 |
attcatgagcaacagcaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttc |
2436115 |
T |
|
| Q |
184 |
cacatacacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccgg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| |||| ||| ||| | ||||||| || ||||| |
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|
| T |
2436114 |
cacatacacaacctttccttctcttataagaggcaggacaaactccaagaattttgtataaaggtgaaagtaatcagatataacaaaaccctcgatccga |
2436015 |
T |
|
| Q |
284 |
atccgcttatat |
295 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2436014 |
atccgcttatat |
2436003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 295
Target Start/End: Complemental strand, 2432853 - 2432642
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| | || |||| ||| || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
2432853 |
attcatgagcaacaacaaccacttgtttaccaacattgcgaccactgtataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttc |
2432754 |
T |
|
| Q |
184 |
cacatacacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccgg |
283 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||| ||| |||| ||| ||| | ||||||| || | ||| |
|
|
| T |
2432753 |
cacatacacaatctttccttctcttataagaggcaggacaaattccaagaattttgtataaaggtgaaagtaatcagatataacaaaaccctcgaaccga |
2432654 |
T |
|
| Q |
284 |
atccgcttatat |
295 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2432653 |
atccgcttatat |
2432642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 295
Target Start/End: Original strand, 2511870 - 2512081
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
2511870 |
attcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaaccaaagctgcaggacctttctcaagaccctcagctatgtcttc |
2511969 |
T |
|
| Q |
184 |
cacatacacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccgg |
283 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||| | || || ||||| || | ||| ||||||||||| |||| ||| ||||||||| || || |
|
|
| T |
2511970 |
cacatacacaaccttcccttctctgatatgaggcaggacgaagtctaagaacttggcatatagatgatagtaatcaactacgacaaaaccttgcaaacga |
2512069 |
T |
|
| Q |
284 |
atccgcttatat |
295 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2512070 |
atccgcttatat |
2512081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 84 - 295
Target Start/End: Original strand, 2505249 - 2505460
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||||||| | |||||||| ||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
2505249 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatatgccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
2505348 |
T |
|
| Q |
184 |
cacatacacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagcaaaaccttccatccgg |
283 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||| | |||||||||||||||| || ||||||||||| ||| |||| |||||||| || ||| |
|
|
| T |
2505349 |
tacatacacaaccttcccttctctgatatgaggcaggacaaactccaagaattttccgtatagatgatagtaatcagctacaataaaaccttgcaaacgg |
2505448 |
T |
|
| Q |
284 |
atccgcttatat |
295 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2505449 |
acccgcttatat |
2505460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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