View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_low_5 (Length: 659)
Name: NF1739_low_5
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_5 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0996 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0687 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 648
Target Start/End: Original strand, 50182458 - 50183090
Alignment:
| Q |
17 |
caaaggtacctgttccccatgcaatttctgctgacacttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaa |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50182458 |
caaaggtacctgttcaccatgcaatttctgctcacacttggatcaaacctcctgtaggcaagattaaatgcaacgtagatgcagccgcttttaataacaa |
50182557 |
T |
|
| Q |
117 |
ttctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggcc |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50182558 |
ttatgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggcc |
50182657 |
T |
|
| Q |
217 |
gagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
50182658 |
gagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgttgtactatttgaaacagattcaaaaattctgtctgatgccatca |
50182757 |
T |
|
| Q |
317 |
actctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggag |
416 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
50182758 |
actctaattttactccaagcaatgaatttggtgatcttgtaatccaatgtaaaagtctcttactcgatagacccgactttgtagtgccgtatattaagag |
50182857 |
T |
|
| Q |
417 |
gtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaatt |
516 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50182858 |
gcaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctag-ccccatatttttcatcatgtaatgcctactttgtattccttaatt |
50182956 |
T |
|
| Q |
517 |
ttgaatgaaatgaagtaactttgccttttgct---nnnnnnnngctctccaaattcatttagataaaattttccggattttcaataagatatgctctcca |
613 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
50182957 |
ttgaatgaaatgaagtaactttgcc-tttgctaaaaaaaaaaagctctccaaattcatttagataaaattttctgtattttcaataagataagctctcca |
50183055 |
T |
|
| Q |
614 |
aattcatcgtatgcttaaacctttgtgcacttcat |
648 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
50183056 |
aattcatcgtatgcttaaacttttgtgcacttcat |
50183090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 39501112 - 39501259
Alignment:
| Q |
383 |
atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt |
482 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| | ||||| ||||||||||||| |||||||||||| | ||||||| |||||| || |
|
|
| T |
39501112 |
atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagcatcactatctcaccctagcctccatatctt |
39501211 |
T |
|
| Q |
483 |
ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
| ||||||||| |||||||||||| | ||| |||| ||||||||||| |
|
|
| T |
39501212 |
tcatcatgtaacacctactttgtatccgttagtttttaatgaaatgaa |
39501259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 528
Target Start/End: Complemental strand, 33978286 - 33978131
Alignment:
| Q |
373 |
ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc |
472 |
Q |
| |
|
||||| ||| || ||||||||||||||||||| || || ||||| |||| ||| | ||||| |||||||||||||| || || ||| | ||||||||| |
|
|
| T |
33978286 |
ctcttgctcaattgacccgactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcc |
33978187 |
T |
|
| Q |
473 |
cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatg |
528 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
33978186 |
cccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatg |
33978131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 271
Target Start/End: Original strand, 39500782 - 39501000
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||| || |||||||||| |||||| || || || ||||||||||| | || |||||| || ||||||| |
|
|
| T |
39500782 |
cttggatcaaaccaccggttggcatgatcaaatgtaatgtagatgcagtcgctttcaacaataactctgttatggggtatgatatgtgtttccgtgactc |
39500881 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| || || ||||| ||||||||||| ||| |||||||||||| | || ||||| |||||| | ||| | || | |||||| ||||||||| |
|
|
| T |
39500882 |
tatgggtgtactattacttggcaaatcagacttctactactcatcagccattgttttagaggctgagtctttcggccttctaggtgctatcaaagtggct |
39500981 |
T |
|
| Q |
253 |
atttcaaatgggatgcatg |
271 |
Q |
| |
|
|| ||| |||| ||||||| |
|
|
| T |
39500982 |
atctcacatggaatgcatg |
39501000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 486
Target Start/End: Original strand, 28037638 - 28037735
Alignment:
| Q |
389 |
ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||| | ||||| |||||||| ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
28037638 |
ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttttat |
28037735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 12458796 - 12458725
Alignment:
| Q |
467 |
ctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt |
538 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||| || ||| ||||||||||| | ||||||| |
|
|
| T |
12458796 |
ctagcccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt |
12458725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 14650987 - 14651080
Alignment:
| Q |
390 |
cgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||| ||||| || ||||| |||| ||||| |||||||||||||||| |||||| |
|
|
| T |
14650987 |
cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat |
14651080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 14660778 - 14660871
Alignment:
| Q |
390 |
cgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||| ||||| || ||||| |||| ||||| |||||||||||||||| |||||| |
|
|
| T |
14660778 |
cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat |
14660871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 7386704 - 7386760
Alignment:
| Q |
436 |
catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgta |
492 |
Q |
| |
|
||||| |||||||| || || |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
7386704 |
catagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgta |
7386760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 27466779 - 27466819
Alignment:
| Q |
365 |
gtagaagtctcttactcgatagacccgactttgtagtgtcg |
405 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
27466779 |
gtagaagtctcttacttaataaacccgactttgtagtgtcg |
27466819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 136 - 540
Target Start/End: Original strand, 31574589 - 31574993
Alignment:
| Q |
136 |
atgtgctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttg |
235 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
31574589 |
atgtgcttttgcgactttacgggaactcttttgcttggaaaatcagacttttaccactcatcaaccacaatcttggagggcgagtctctaggtttacttg |
31574688 |
T |
|
| Q |
236 |
atgctattaaa-gtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaa |
334 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| || ||| |||||||||||||||||||||||||| || |
|
|
| T |
31574689 |
atactattaaaagtggctatttcaaatgggatgcatgttgtactatttgaaatagattctaaaattctgtttgatgccatcaactctaattttactccaa |
31574788 |
T |
|
| Q |
335 |
gcaatgaatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgc |
434 |
Q |
| |
|
||||| |||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
31574789 |
-caatgcatttggtgattttgtaatccaatgtagaagtctcttactcgatagatccgactttgcagtgtcgtatattaggaggcaagtaaatggtgttgc |
31574887 |
T |
|
| Q |
435 |
ccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaa |
534 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31574888 |
tcgtagtattgctagggcatcactatctaatcctagccgccatatttttcatcatgtaatgcctacttagtattccttaattttgaatgaaatgaagtaa |
31574987 |
T |
|
| Q |
535 |
ctttgc |
540 |
Q |
| |
|
|||||| |
|
|
| T |
31574988 |
ctttgc |
31574993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 79 - 530
Target Start/End: Complemental strand, 2497501 - 2497054
Alignment:
| Q |
79 |
attaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaat |
178 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| |||||| | ||||| | ||||||||| ||||| |||| || ||| ||| | || ||||| |||| |
|
|
| T |
2497501 |
attaaatgcaatgtcgatgcagctgcatttaataataattctatcatggggtatggtatgtgttttcgcgactatacgggtactttcttacttgggaaat |
2497402 |
T |
|
| Q |
179 |
cagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtact |
278 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
2497401 |
cagacttttatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaagtggctatttcaaatgagatgcatgttgtatt |
2497302 |
T |
|
| Q |
279 |
atttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctctta |
378 |
Q |
| |
|
||||||||| ||||| || | || ||||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||||||| |
|
|
| T |
2497301 |
atttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctctta |
2497202 |
T |
|
| Q |
379 |
ctcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccata |
478 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| || || |||||||| ||||||| |||||||||||| | || || |||||| ||||||||||||||| |
|
|
| T |
2497201 |
cttgataaacccgactttgcagtgtcgtatgtt----ggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccata |
2497106 |
T |
|
| Q |
479 |
ttttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2497105 |
tttttcatcatgtattgcctactttgtaccgcttaattatgaatgaaatgaa |
2497054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 539
Target Start/End: Complemental strand, 4741702 - 4741528
Alignment:
| Q |
365 |
gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa |
464 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| |||||||| |||||||| | || ||| ||||| |||||||||||||| ||||| |||| || |
|
|
| T |
4741702 |
gtagaagtctcttactttctagaaactactttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaa |
4741603 |
T |
|
| Q |
465 |
tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttg |
539 |
Q |
| |
|
||||||||||||||||||| | ||||| | ||||||| || | |||||| ||||||||||||| |||||||| |
|
|
| T |
4741602 |
ccctagcccccatattttttgtgatgtaccgactactttatactttttaattatgaatgaaatgaattaactttg |
4741528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 54548415 - 54548318
Alignment:
| Q |
389 |
ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||| | ||||| |||||||| ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
54548415 |
ccgactttaaagtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat |
54548318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 52964238 - 52964141
Alignment:
| Q |
389 |
ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||| | ||||| |||||||| ||||| | || ||||| |||||||||||||| |||||||| |
|
|
| T |
52964238 |
ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttttat |
52964141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 29210899 - 29210843
Alignment:
| Q |
436 |
catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgta |
492 |
Q |
| |
|
||||| |||||||| || || |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
29210899 |
catagcattgctagagcctctttatctaatcctaacccccatattttttatgatgta |
29210843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 163 - 538
Target Start/End: Original strand, 14785776 - 14786148
Alignment:
| Q |
163 |
cttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatg |
262 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||| ||||| | || |||||||||||||||||| |
|
|
| T |
14785776 |
cttttgcttggaaaatcatacttttaccattcatcagccacaattttggagaccgagtctctaggcttgcttgacacaat--aagtggctatttcaaatg |
14785873 |
T |
|
| Q |
263 |
ggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaa |
362 |
Q |
| |
|
|||||| || ||||||||||||||| ||| |||| || ||| ||||||||||||||| || | | ||| |||||||| || ||||||||||||||| | |
|
|
| T |
14785874 |
ggatgcttgatgtactatttgaaactaatttaaaacttatgtatgatgccatcaactcaaactcttctcccagcaatgagttaggtgatcttgtaatcca |
14785973 |
T |
|
| Q |
363 |
aagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatct |
462 |
Q |
| |
|
| |||||||||| ||| | ||||||||| | ||| | ||||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
14785974 |
atgtagaagtcttttatttgatagacccaatttttcaatgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagcatcactatct |
14786073 |
T |
|
| Q |
463 |
aatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt |
538 |
Q |
| |
|
||| || ||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14786074 |
catcttaacccccttatttttcatcat-taatgcttactttgtattccttaattttgaatgaaatgaagtaacttt |
14786148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 384 - 544
Target Start/End: Original strand, 10748038 - 10748198
Alignment:
| Q |
384 |
tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt |
483 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||| ||||| ||| |
|
|
| T |
10748038 |
tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagccctcatatcttt |
10748137 |
T |
|
| Q |
484 |
tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10748138 |
catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt |
10748198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 10747699 - 10747914
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||| || ||||||||||| ||||| | || || ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
10747699 |
cttggatcaaaccaccggttggcatgatcaaatgtaatgtagatgcagctgctttcgacaataactctgttatggggtatggtatgtgtttccgtgactc |
10747798 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || ||||| ||||||||||| ||| ||||||||||||| | || ||||| |||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
10747799 |
tatgggtgtattattacttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggct |
10747898 |
T |
|
| Q |
253 |
atttcaaatgggatgc |
268 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
10747899 |
atctcacatggaatgc |
10747914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 493
Target Start/End: Complemental strand, 36757042 - 36756940
Alignment:
| Q |
391 |
gactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatg |
490 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||| ||| ||||| |||||||||||||| || || |||| ||||||||||||||||||| ||||||| |
|
|
| T |
36757042 |
gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatg |
36756943 |
T |
|
| Q |
491 |
taa |
493 |
Q |
| |
|
||| |
|
|
| T |
36756942 |
taa |
36756940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 530
Target Start/End: Complemental strand, 37670821 - 37670656
Alignment:
| Q |
365 |
gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa |
464 |
Q |
| |
|
||||||||||| |||| |||| ||||||||| |||||||| |||| ||| || ||||| |||| |||||||||||||| ||||| |||| | |
|
|
| T |
37670821 |
gtagaagtctcgtactttctagaaacgactttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagcatctttatccca |
37670722 |
T |
|
| Q |
465 |
tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||| | |||||| || |||||||||| |
|
|
| T |
37670721 |
ccctagcccccatattttttatgatgtaccgactactttgtaccctttaattatggatgaaatgaa |
37670656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 491
Target Start/End: Complemental strand, 16468451 - 16468348
Alignment:
| Q |
388 |
cccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatc |
487 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||| || |||| |||||||| || | ||||||||||||||||| ||| | |||||| |
|
|
| T |
16468451 |
cccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatctaatcctagccctcatgtcttttatg |
16468352 |
T |
|
| Q |
488 |
atgt |
491 |
Q |
| |
|
|||| |
|
|
| T |
16468351 |
atgt |
16468348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 79 - 530
Target Start/End: Complemental strand, 12351134 - 12350683
Alignment:
| Q |
79 |
attaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaat |
178 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| |||||| | ||||| | ||| ||||| ||||| |||| || || ||| | |||||||| |||| |
|
|
| T |
12351134 |
attaaatgcaacgtcgatgcagctgcatttaataataattctatcatggggtatggcatgtgttttcgggactctacaggtactttgttgcttgggaaat |
12351035 |
T |
|
| Q |
179 |
cagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtact |
278 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||| |||| | |
|
|
| T |
12351034 |
cagacttttatcactcatcagccactattttggaggcagaatctctagccttgcttgatgctattaaaatggctatttcaaatgagatgcatgttgtatt |
12350935 |
T |
|
| Q |
279 |
atttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctctta |
378 |
Q |
| |
|
||||||||| ||||| || | || ||||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||| ||| |
|
|
| T |
12350934 |
atttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctatta |
12350835 |
T |
|
| Q |
379 |
ctcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccata |
478 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| |||||||| |||||||| |||||| |||||||||||| | || || |||||| |||||| |||||||| |
|
|
| T |
12350834 |
cttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcctatcccccata |
12350735 |
T |
|
| Q |
479 |
ttttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12350734 |
tttttcatcatgtattgcctactttgtaccatttaattttgaatgaaatgaa |
12350683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 79 - 530
Target Start/End: Original strand, 41147437 - 41147888
Alignment:
| Q |
79 |
attaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaat |
178 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| |||||| | ||||| | ||||||||| ||||| |||| || || ||| |||| ||||| |||| |
|
|
| T |
41147437 |
attaaatgcaatgtcgatgcagctgcatttaataataattctatcatggggtatggtatgtgttttcgcgactatacaggtacttttttacttgggaaat |
41147536 |
T |
|
| Q |
179 |
cagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtact |
278 |
Q |
| |
|
|||||||| | |||||||||||||| | |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||| |||| | |
|
|
| T |
41147537 |
cagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatgagatgcatgttgtatt |
41147636 |
T |
|
| Q |
279 |
atttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctctta |
378 |
Q |
| |
|
||||||||| ||||| || | || ||||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||||||| |
|
|
| T |
41147637 |
atttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctctta |
41147736 |
T |
|
| Q |
379 |
ctcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccata |
478 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| |||||||| |||||||| ||||||| |||||||||||| | || || |||||| ||||||||||||||| |
|
|
| T |
41147737 |
cttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccata |
41147836 |
T |
|
| Q |
479 |
ttttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
41147837 |
tttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa |
41147888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 544
Target Start/End: Complemental strand, 30305444 - 30305265
Alignment:
| Q |
365 |
gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaa |
464 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||| || ||||| || ||||| | |||| ||||||||||||| ||||||||||| | |
|
|
| T |
30305444 |
gtagaagtctcttactcaatagtttcgactttgtagagtcgtatgtttggaggcaaacaaatagaattgctcatagtattgctaaaacatcactatctca |
30305345 |
T |
|
| Q |
465 |
tcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
||||| |||||||||||| ||||||| | ||||||||||| | || |||||| |||||| ||| |||||| |||||| |
|
|
| T |
30305344 |
ccctagaccccatatttttcgtcatgtatcgtctactttgtatccgttgattttgtatgaaaggaactaacttcgccttt |
30305265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 373 - 527
Target Start/End: Original strand, 513829 - 513983
Alignment:
| Q |
373 |
ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc |
472 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| || ||||| |||| ||| | ||||| |||||||||||||| || || ||| | |||||| || |
|
|
| T |
513829 |
ctcttgctcaatagacccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacc |
513928 |
T |
|
| Q |
473 |
cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaat |
527 |
Q |
| |
|
|||||||||| || |||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
513929 |
tccatatttttaatgttgtaccttctactttgtactccttaattacgaatgaaat |
513983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 43970028 - 43970138
Alignment:
| Q |
382 |
gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt |
481 |
Q |
| |
|
|||| |||||||||| ||||||| || || | ||| |||||||| ||||| |||||||||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
43970028 |
gataaacccgactttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattt |
43970127 |
T |
|
| Q |
482 |
tttatcatgta |
492 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
43970128 |
tctatgatgta |
43970138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 492
Target Start/End: Original strand, 41605361 - 41605464
Alignment:
| Q |
389 |
ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatca |
488 |
Q |
| |
|
||||||||||||||||||| || |||||| |||||| ||||| |||||||||||||| || || |||| |||| | |||||||||||||||| | |
|
|
| T |
41605361 |
ccgactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatccaatctcaacccccatattttttataa |
41605460 |
T |
|
| Q |
489 |
tgta |
492 |
Q |
| |
|
|||| |
|
|
| T |
41605461 |
tgta |
41605464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 79 - 530
Target Start/End: Original strand, 23150952 - 23151403
Alignment:
| Q |
79 |
attaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaat |
178 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| |||||| | ||||| | ||||||||| ||||| |||| || || ||| |||| ||||| |||| |
|
|
| T |
23150952 |
attaaatgcaatgtcgatgcagctgcatttaataataattctatcatggggtatggtatgtgttttcgcgactatacaggtacttttttacttgggaaat |
23151051 |
T |
|
| Q |
179 |
cagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtact |
278 |
Q |
| |
|
|||||||| | |||||||||||||| | |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||| |||| | |
|
|
| T |
23151052 |
cagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatgagatgcatgttgtatt |
23151151 |
T |
|
| Q |
279 |
atttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctctta |
378 |
Q |
| |
|
||||||||| ||||| || | || ||||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||||||| |
|
|
| T |
23151152 |
atttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctctta |
23151251 |
T |
|
| Q |
379 |
ctcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccata |
478 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| |||||||| |||||||| ||||||| |||||||||||| | || || |||||| ||||||||||||||| |
|
|
| T |
23151252 |
cttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccata |
23151351 |
T |
|
| Q |
479 |
ttttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
23151352 |
tttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa |
23151403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 336 - 530
Target Start/End: Original strand, 28499116 - 28499310
Alignment:
| Q |
336 |
caatgaatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcc |
435 |
Q |
| |
|
|||||| ||||| |||||| ||||| || |||||||||||||| | |||| ||| |||||| ||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
28499116 |
caatgagtttggagatcttataatccaatgtagaagtctcttatttgataaacctgactttacagtgtcgtatgttaggaggcaagcaaatagtgttgct |
28499215 |
T |
|
| Q |
436 |
catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
|||||||||||| | || || |||||| |||||||||||||||||||| |||||||| |||||||||| || | |||||| ||||||||||||| |
|
|
| T |
28499216 |
catagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttatactgtttaattatgaatgaaatgaa |
28499310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 13021015 - 13020906
Alignment:
| Q |
382 |
gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt |
481 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||| || || |||| ||||||| ||||||||||| |
|
|
| T |
13021015 |
gataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaacccccatattt |
13020916 |
T |
|
| Q |
482 |
tttatcatgt |
491 |
Q |
| |
|
| ||| |||| |
|
|
| T |
13020915 |
tctatgatgt |
13020906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 13092539 - 13092430
Alignment:
| Q |
382 |
gatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattt |
481 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||| || || |||| ||||||| ||||||||||| |
|
|
| T |
13092539 |
gataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtcgttatccaatcctaacccccatattt |
13092440 |
T |
|
| Q |
482 |
tttatcatgt |
491 |
Q |
| |
|
| ||| |||| |
|
|
| T |
13092439 |
tctatgatgt |
13092430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 34893821 - 34893753
Alignment:
| Q |
476 |
atattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||||||||||||||| | ||| ||||||| |
|
|
| T |
34893821 |
atatttttcatcatgtattgcctactttgtaccaattaattttgaatgaaatgaattgactctgccttt |
34893753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 10813233 - 10813136
Alignment:
| Q |
389 |
ccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttat |
486 |
Q |
| |
|
|||||||| |||||| || ||| ||||| |||| ||| | ||||| |||||||| ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
10813233 |
ccgactttaaagtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat |
10813136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 544
Target Start/End: Original strand, 7274525 - 7274681
Alignment:
| Q |
388 |
cccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatc |
487 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||| |||| || |||| |||||| || | | ||||| |||||||||||||| | |||||| |
|
|
| T |
7274525 |
cccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcataatattgcgagagatgctctatcgtatcctagcccccatgtcttttatg |
7274624 |
T |
|
| Q |
488 |
atgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
|||| |||| |||||||| || || ||||||||||| ||||| ||||||||| |
|
|
| T |
7274625 |
atgttcctactaccttgtattctctatttgtgaatgaaatggagtaattttgccttt |
7274681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 79 - 530
Target Start/End: Original strand, 32499229 - 32499680
Alignment:
| Q |
79 |
attaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaat |
178 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| |||||| | ||||| | ||||||||| ||||| |||| || || ||| |||| ||||| |||| |
|
|
| T |
32499229 |
attaaatgcaatgtcgatgcagctgcatttaataataattctatcatggggtatggtatgtgttttcgcgactatacaggtacttttttacttgggaaat |
32499328 |
T |
|
| Q |
179 |
cagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtact |
278 |
Q |
| |
|
|||||||| | |||||||||||||| | |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||| |||| | |
|
|
| T |
32499329 |
cagactttcatcactcatcagccactgttttggaggcagaatctctagccttgcttgatgctattaaattggctatttcaaatgagatgcatgttgtatt |
32499428 |
T |
|
| Q |
279 |
atttgaaacagattcaaaatttttgtctgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctctta |
378 |
Q |
| |
|
||||||||| ||||| || | || ||||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||||||| |
|
|
| T |
32499429 |
atttgaaactgattcgaagatcttagctgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctctta |
32499528 |
T |
|
| Q |
379 |
ctcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccata |
478 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| |||||||| |||||||| ||||||| |||||||||||| | || || |||||| ||||||||||||||| |
|
|
| T |
32499529 |
cttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccata |
32499628 |
T |
|
| Q |
479 |
ttttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
32499629 |
tttttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatgaa |
32499680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 384 - 544
Target Start/End: Complemental strand, 42327995 - 42327835
Alignment:
| Q |
384 |
tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt |
483 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||| |
|
|
| T |
42327995 |
tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt |
42327896 |
T |
|
| Q |
484 |
tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
42327895 |
catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt |
42327835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 42328326 - 42328111
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||| || ||||||||||| ||||| | || || ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
42328326 |
cttggatcaaaccaccggttggcatgatcaaatgtaatgtagatgcagctgctttcgacaataactctgttatggggtatggtatgtgtttccgtgactc |
42328227 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || ||||| ||||||||||| ||| ||||||||||||| | || ||||| |||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
42328226 |
tatgggtgtattattacttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggct |
42328127 |
T |
|
| Q |
253 |
atttcaaatgggatgc |
268 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
42328126 |
atctcacatggaatgc |
42328111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 346 - 544
Target Start/End: Original strand, 1480981 - 1481177
Alignment:
| Q |
346 |
ggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattg |
445 |
Q |
| |
|
||||||||||||| || |||||||| | |||| |||||||| |||||||||||||||| ||||||| |||||||| | ||| | |||||||||| |
|
|
| T |
1480981 |
ggtgatcttgtaactcaatgtagaagtttactacttaatagacccaactttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattg |
1481080 |
T |
|
| Q |
446 |
ctagggcatcactatctaatcctagcccccatattttttatcatgtaat---gcctactttgtattccttaattttgaatgaaatgaagtaactttgcct |
542 |
Q |
| |
|
||| |||||||||||| ||||||||||| ||| |||||||||| ||| ||||| ||| |||||||| ||||||||||| |||||||| || |
|
|
| T |
1481081 |
ttagagcatcactatct-----cagcccccatatctttcatcatgtaataaggccgactttctatctgttaatttttaatgaaatgaattaactttgtct |
1481175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 530
Target Start/End: Complemental strand, 54421494 - 54421356
Alignment:
| Q |
392 |
actttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatgt |
491 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| ||| |||| |||||||||||||| || || |||| ||||||||||||||||||| |||||||| |
|
|
| T |
54421494 |
actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgt |
54421395 |
T |
|
| Q |
492 |
aatgcctactttgtattccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
|| |||||||||| || || |||||| |||| ||||| |
|
|
| T |
54421394 |
aacaactactttgtactctttgattttggatgatatgaa |
54421356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 2262648 - 2262684
Alignment:
| Q |
235 |
gatgctattaaagtggctatttcaaatgggatgcatg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2262648 |
gatgctattaaagtggctatttcaaatgaaatgcatg |
2262684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 536
Target Start/End: Original strand, 43733950 - 43734050
Alignment:
| Q |
436 |
catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaac |
535 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||||||||||| ||| || ||||| |||||| ||||||||| ||| | ||||||||| |||||| |
|
|
| T |
43733950 |
catagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgtatcttctacttggtattccttgattattaatgaaatgcagtaac |
43734049 |
T |
|
| Q |
536 |
t |
536 |
Q |
| |
|
| |
|
|
| T |
43734050 |
t |
43734050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 106 - 530
Target Start/End: Complemental strand, 11355 - 10931
Alignment:
| Q |
106 |
tttaataacaattctgttatgggatttggtatgtgctttcgtgactttaagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaa |
205 |
Q |
| |
|
|||||||| |||||| | ||||| | ||||||||| ||||| |||| || ||| ||| | || ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
11355 |
tttaataataattctatcatggggtatggtatgtgttttcgcgactatacgggtactttcttacttgggaaatcagacttttatcactcatcagccactg |
11256 |
T |
|
| Q |
206 |
tcttggaggccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtc |
305 |
Q |
| |
|
| |||||||| || ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||| ||||| || | || | |
|
|
| T |
11255 |
ttttggaggcagaatctctagccttgcttgatgatattaaagtggctatttcaaatgagatgcatgttgtattatttgaaactgattcgaagatcttagc |
11156 |
T |
|
| Q |
306 |
tgatgccatcaactctaattttactctaagcaatgaatttggtgatcttgtaatcaaaagtagaagtctcttactcgatagacccgactttgtagtgtcg |
405 |
Q |
| |
|
|||||| ||| | ||| | | | | | |||||| ||||| |||||||||| | || |||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
11155 |
tgatgcactcaccaataactcttcccctaccaatgagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcg |
11056 |
T |
|
| Q |
406 |
taaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgt |
505 |
Q |
| |
|
|| |||||||| |||||||| ||||||| | |||||||||| | || || |||||| |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
11055 |
tatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgt |
10956 |
T |
|
| Q |
506 |
attccttaattttgaatgaaatgaa |
530 |
Q |
| |
|
| | ||||| ||||||||||||| |
|
|
| T |
10955 |
accgcctaattatgaatgaaatgaa |
10931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 383 - 544
Target Start/End: Complemental strand, 34752783 - 34752622
Alignment:
| Q |
383 |
atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt |
482 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| | |||| |||||||||||||| |||||||||||| | |||||||||||||| || |
|
|
| T |
34752783 |
atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagcatcactatctcaccctagcccccatatctt |
34752684 |
T |
|
| Q |
483 |
ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
| ||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
34752683 |
tcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaattaactttgccttt |
34752622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 384 - 544
Target Start/End: Complemental strand, 9180823 - 9180663
Alignment:
| Q |
384 |
tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt |
483 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||| |
|
|
| T |
9180823 |
tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt |
9180724 |
T |
|
| Q |
484 |
tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9180723 |
catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt |
9180663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 383 - 540
Target Start/End: Original strand, 11629487 - 11629644
Alignment:
| Q |
383 |
atagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatatttt |
482 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| | ||||| |||||||||||||| |||||| ||||| | ||||| |||||||| || |
|
|
| T |
11629487 |
atagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctaggccccatatctt |
11629586 |
T |
|
| Q |
483 |
ttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgc |
540 |
Q |
| |
|
| |||||||| |||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
11629587 |
tcatcatgtagcacctactttgtatccgttaatttttaatgaaatgaattaactttgc |
11629644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 267
Target Start/End: Complemental strand, 34753113 - 34752899
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
|||||| |||||| ||||| |||| ||| ||||| || ||||||||| | ||||| | || || ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
34753113 |
cttggaccaaaccacctgttggcatgatcaaatgtaatgtagatgcatctgctttcgacaataactctgttatggggtatggtatgtgtttccgtgactc |
34753014 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || ||||| ||||||||||| ||| ||||||||||||| | || |||||||||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
34753013 |
tatgggtgtattattacttggcaaatcagacttctactactcatcagccactgttttagaggccgagtctttaggccttctagatgctatcaaagtggct |
34752914 |
T |
|
| Q |
253 |
atttcaaatgggatg |
267 |
Q |
| |
|
|| ||| |||| ||| |
|
|
| T |
34752913 |
atctcacatggaatg |
34752899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 9181154 - 9180939
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||| || ||||||||||| ||||| | || || ||||||||| | | ||||||||| || ||||||| |
|
|
| T |
9181154 |
cttggatcaaaccaccggttggcatgatcaaatgtaatgtagatgcagctgctttcgacaataactctgttatgtggtatggtatgtgtttccgtgactc |
9181055 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || ||||| ||||||||||| ||| ||||||||||||| | || ||||| |||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
9181054 |
tatgggtgtattattacttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggct |
9180955 |
T |
|
| Q |
253 |
atttcaaatgggatgc |
268 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
9180954 |
atctcacatggaatgc |
9180939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 11629157 - 11629372
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| | || |||| ||| ||||| || ||||||||||| ||||| | || || ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
11629157 |
cttggatcaaaccatcggttggcatgatcaaatgtaatgtagatgcagctgctttcgacaataactctgttatggggtatggtatgtgtttccgtgactc |
11629256 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || |||| ||||||||||| ||| ||||||| ||||| | || ||||| |||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
11629257 |
tatgggtgtattattacttgataaatcagacttctactactcatcggccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggct |
11629356 |
T |
|
| Q |
253 |
atttcaaatgggatgc |
268 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
11629357 |
atctcacatggaatgc |
11629372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 7593712 - 7593613
Alignment:
| Q |
214 |
gccgagtctctaggcttactt--gatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgc |
311 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||| | ||||||| |||| ||| ||||||||||||| |
|
|
| T |
7593712 |
gccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaattgatttcaaagttttgtctgatgc |
7593613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 540
Target Start/End: Original strand, 10394672 - 10394776
Alignment:
| Q |
436 |
catagtattgctagggcatcactatctaatcctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaac |
535 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||| |||||||| || |||||| || ||||||| ||||||| |||||||||||| || | |
|
|
| T |
10394672 |
catagtattgctagcgcatctttatctcatcctaacccctatatttttcatgatgtaacaacttctttgtacatgttaatttggaatgaaatgaattagc |
10394771 |
T |
|
| Q |
536 |
tttgc |
540 |
Q |
| |
|
||||| |
|
|
| T |
10394772 |
tttgc |
10394776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 384 - 544
Target Start/End: Complemental strand, 10159047 - 10158887
Alignment:
| Q |
384 |
tagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcccccatattttt |
483 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| | ||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||| |
|
|
| T |
10159047 |
tagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt |
10158948 |
T |
|
| Q |
484 |
tatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgccttt |
544 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10158947 |
catcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaactttgccttt |
10158887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 10159378 - 10159163
Alignment:
| Q |
53 |
cttggatcaaacctcctgtgggcaagattaaatgcaacgtagatgcagccgcttttaataacaattctgttatgggatttggtatgtgctttcgtgactt |
152 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||| || ||||||||||| ||||| | || || ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
10159378 |
cttggatcaaaccaccggttggcatgatcaaatgtaatgtagatgcagctgctttcgacaataactctgttatggggtatggtatgtgtttccgtgactc |
10159279 |
T |
|
| Q |
153 |
taagggaactcttttgcttggaaaatcagacttttaccactcatcagccacaatcttggaggccgagtctctaggcttacttgatgctattaaagtggct |
252 |
Q |
| |
|
|| ||| | || ||||| ||||||||||| ||| ||||||||||||| | || ||||| |||||| ||||| | || |||||||| ||||||||| |
|
|
| T |
10159278 |
tatgggtgtattattacttggcaaatcagacttctactactcatcagccactgttttagaggctgagtctttaggccttctagatgctatcaaagtggct |
10159179 |
T |
|
| Q |
253 |
atttcaaatgggatgc |
268 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
10159178 |
atctcacatggaatgc |
10159163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 538
Target Start/End: Original strand, 16863312 - 16863383
Alignment:
| Q |
467 |
ctagcccccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaacttt |
538 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||| || ||| ||||||||||| | ||||||| |
|
|
| T |
16863312 |
ctagcccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt |
16863383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 373 - 529
Target Start/End: Complemental strand, 1652 - 1496
Alignment:
| Q |
373 |
ctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactatctaatcctagcc |
472 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| || ||||| |||| ||| | ||||| |||||||||||||| || || ||| | ||||||||| |
|
|
| T |
1652 |
ctcttgctcaatagacccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcc |
1553 |
T |
|
| Q |
473 |
cccatattttttatcatgtaatgcctactttgtattccttaattttgaatgaaatga |
529 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
1552 |
cccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatga |
1496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 365 - 460
Target Start/End: Complemental strand, 188492 - 188397
Alignment:
| Q |
365 |
gtagaagtctcttactcgatagacccgactttgtagtgtcgtaaattaggaggtaagcaaatggtgttgcccatagtattgctagggcatcactat |
460 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |||||||| ||| |||| | ||||| |||| ||||||||| || ||||||| |
|
|
| T |
188492 |
gtagaagtctcttacttattagacccgactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgctagagcctcactat |
188397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 3060 - 2961
Alignment:
| Q |
214 |
gccgagtctctaggcttactt--gatgctattaaagtggctatttcaaatgggatgcatgctgtactatttgaaacagattcaaaatttttgtctgatgc |
311 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||| | ||||||| |||| ||| ||||||||||||| |
|
|
| T |
3060 |
gccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaattgatttcaaagttttgtctgatgc |
2961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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