View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_52 (Length: 298)
Name: NF1739_low_52
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 25840505 - 25840769
Alignment:
| Q |
15 |
attatctacaaataatgataaatgattcgtgattggtagattttgatggtgcatcaaaatattgaccatggtnnnnnnnnntcttcacaagcatgtaaaa |
114 |
Q |
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| T |
25840505 |
attatctacaaataatgataaatgattcgtgattggtagattttgatggtgcatcaaaatattgaccatggtaaaaaaaaatcttcacaagcatgtaaaa |
25840604 |
T |
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| Q |
115 |
acttaaaaacgcacctgcaacattgaattcttacgactcttcaaggaagaccgagacttcatagaagaaaccaattcagaatcattaacctcatcacgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840605 |
acttaaaaacgcacctgcaacattgaattcttacgactcttcaaggaagaccgagacttcatagaagaaaccaattcagaatcattaacctcatcacgag |
25840704 |
T |
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| Q |
215 |
aatcaaatgaagaaatagaagcaaaactaatttgattcaacaattcaacattctcctgattagcc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840705 |
aatcaaatgaagaaatagaagcaaaactaatttgattcaacaattcaacattctcctgattagcc |
25840769 |
T |
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