View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_55 (Length: 295)
Name: NF1739_low_55
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3731600 - 3731881
Alignment:
| Q |
1 |
agacattccctagaagaataatacaaccacataaccaaatcagcattaatagaccatatgataaattatgaaacactgaaaaatttgcttactactccat |
100 |
Q |
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| T |
3731600 |
agacattccctagaagaataatacaaccacataaccaaatcagcattattagactatatgataaattatgaaacactgaaaaatttgcttactactccat |
3731699 |
T |
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| Q |
101 |
tgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgacacatg |
200 |
Q |
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| T |
3731700 |
tgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaacgaacatgcagggtatctaactcttagtgttttctcttgttctgacacatg |
3731799 |
T |
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| Q |
201 |
atgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
282 |
Q |
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| T |
3731800 |
atgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
3731881 |
T |
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Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 11683914 - 11684197
Alignment:
| Q |
1 |
agacattccctagaagaataatacaaccacataaccaaatcagcattaatagaccatatgataaattatgaaacact----gaaaaatttgcttactact |
96 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
11683914 |
agacattccctagaagaataatacaatcacataacaaaatcagcattattagaccatatagtaaattatgaaacactatatgaaaaatttgcttactact |
11684013 |
T |
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| Q |
97 |
ccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgaca |
196 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11684014 |
ccattgccatccaagatacttgtggtggatgctatgtgtcttttggctgctaatgaacatgcagggtatcttactcttagggttttctcttgttctgaca |
11684113 |
T |
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| Q |
197 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacag |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
11684114 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcgatatacacag |
11684197 |
T |
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