View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_6 (Length: 655)

Name: NF1739_low_6
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_6
NF1739_low_6
[»] chr4 (24 HSPs)
chr4 (12-639)||(17133106-17133735)
chr4 (99-409)||(8501855-8502168)
chr4 (93-410)||(43357700-43358016)
chr4 (293-378)||(14116288-14116374)
chr4 (319-383)||(19052734-19052797)
chr4 (543-605)||(3189165-3189221)
chr4 (98-181)||(24716257-24716340)
chr4 (543-601)||(29030331-29030384)
chr4 (543-601)||(29042445-29042499)
chr4 (543-601)||(19143791-19143846)
chr4 (293-348)||(11011604-11011659)
chr4 (319-393)||(17743109-17743184)
chr4 (543-604)||(23508561-23508615)
chr4 (553-599)||(10329191-10329236)
chr4 (553-603)||(11900291-11900341)
chr4 (543-592)||(24028875-24028922)
chr4 (543-592)||(17928126-17928174)
chr4 (543-592)||(49503336-49503384)
chr4 (543-592)||(49509401-49509449)
chr4 (321-397)||(13977922-13977997)
chr4 (576-604)||(20976643-20976671)
chr4 (573-601)||(24618887-24618915)
chr4 (543-601)||(25008326-25008383)
chr4 (576-604)||(56533874-56533902)
[»] chr2 (25 HSPs)
chr2 (93-407)||(9123855-9124165)
chr2 (198-365)||(42297968-42298136)
chr2 (206-387)||(12060411-12060593)
chr2 (76-329)||(24228074-24228327)
chr2 (543-603)||(30489625-30489684)
chr2 (355-409)||(24110046-24110100)
chr2 (332-408)||(23958921-23958997)
chr2 (198-305)||(13892140-13892245)
chr2 (198-305)||(14032265-14032370)
chr2 (543-601)||(24428386-24428445)
chr2 (92-185)||(12060591-12060681)
chr2 (543-601)||(19355687-19355744)
chr2 (543-601)||(22615032-22615090)
chr2 (543-592)||(16768324-16768373)
chr2 (237-285)||(33013968-33014016)
chr2 (293-348)||(12845862-12845917)
chr2 (333-396)||(27760903-27760966)
chr2 (543-592)||(4219864-4219911)
chr2 (576-605)||(19539643-19539672)
chr2 (543-601)||(20567416-20567476)
chr2 (543-601)||(24838286-24838340)
chr2 (324-380)||(8685015-8685070)
chr2 (576-604)||(22316794-22316822)
chr2 (551-601)||(24802454-24802501)
chr2 (319-379)||(27766152-27766211)
[»] chr1 (24 HSPs)
chr1 (76-350)||(10655921-10656194)
chr1 (93-387)||(25517024-25517317)
chr1 (131-364)||(18581949-18582181)
chr1 (543-601)||(41133443-41133501)
chr1 (543-601)||(3170947-3171002)
chr1 (543-601)||(3181549-3181604)
chr1 (543-603)||(9750044-9750099)
chr1 (553-601)||(21205700-21205748)
chr1 (543-601)||(36099863-36099918)
chr1 (543-601)||(28379141-28379197)
chr1 (543-603)||(4251395-4251456)
chr1 (543-592)||(34190077-34190126)
chr1 (543-605)||(18382728-18382783)
chr1 (307-410)||(26858781-26858885)
chr1 (198-289)||(35895717-35895807)
chr1 (543-605)||(52351484-52351544)
chr1 (577-607)||(12283584-12283614)
chr1 (543-592)||(16710170-16710217)
chr1 (543-592)||(21862995-21863042)
chr1 (543-592)||(35012263-35012310)
chr1 (543-599)||(674770-674829)
chr1 (553-601)||(21215515-21215564)
chr1 (543-601)||(22610802-22610856)
chr1 (318-377)||(34487729-34487789)
[»] scaffold0194 (1 HSPs)
scaffold0194 (92-316)||(7002-7218)
[»] chr7 (30 HSPs)
chr7 (92-409)||(17879758-17880075)
chr7 (128-406)||(8309646-8309922)
chr7 (543-601)||(3477202-3477259)
chr7 (543-601)||(1775516-1775571)
chr7 (543-601)||(1986921-1986976)
chr7 (543-601)||(1997544-1997597)
chr7 (543-601)||(42875836-42875889)
chr7 (543-601)||(45931031-45931085)
chr7 (95-143)||(10677064-10677112)
chr7 (576-608)||(13259381-13259413)
chr7 (543-601)||(11015177-11015235)
chr7 (543-601)||(13879332-13879388)
chr7 (312-383)||(19143454-19143524)
chr7 (312-383)||(20742853-20742923)
chr7 (319-377)||(31270634-31270693)
chr7 (543-601)||(601987-602040)
chr7 (543-601)||(2717079-2717135)
chr7 (543-592)||(8627340-8627387)
chr7 (356-406)||(20052742-20052792)
chr7 (330-408)||(21019388-21019466)
chr7 (576-606)||(21284312-21284342)
chr7 (92-142)||(21620692-21620742)
chr7 (576-605)||(4493735-4493764)
chr7 (543-601)||(13681706-13681760)
chr7 (576-605)||(24883281-24883310)
chr7 (576-604)||(2499220-2499248)
chr7 (312-368)||(10974881-10974937)
chr7 (576-604)||(11792062-11792090)
chr7 (576-608)||(13261613-13261645)
chr7 (576-604)||(14746557-14746585)
[»] scaffold0042 (2 HSPs)
scaffold0042 (76-302)||(89418-89644)
scaffold0042 (310-397)||(89693-89780)
[»] chr3 (22 HSPs)
chr3 (92-226)||(9829472-9829605)
chr3 (76-194)||(24097714-24097833)
chr3 (543-601)||(7805298-7805356)
chr3 (198-287)||(19264248-19264337)
chr3 (278-381)||(27685516-27685620)
chr3 (539-605)||(6501776-6501835)
chr3 (543-603)||(29906962-29907021)
chr3 (543-603)||(29948128-29948187)
chr3 (543-603)||(29997282-29997341)
chr3 (257-348)||(9829615-9829705)
chr3 (543-601)||(13147445-13147501)
chr3 (543-601)||(15194787-15194844)
chr3 (543-601)||(9381439-9381493)
chr3 (543-601)||(7795387-7795448)
chr3 (543-592)||(5520281-5520328)
chr3 (543-592)||(20673973-20674021)
chr3 (543-592)||(20720516-20720564)
chr3 (543-592)||(24669883-24669931)
chr3 (576-605)||(52919618-52919647)
chr3 (95-189)||(55212705-55212801)
chr3 (576-604)||(15663544-15663572)
chr3 (198-273)||(31779283-31779358)
[»] chr8 (25 HSPs)
chr8 (153-348)||(27137734-27137930)
chr8 (543-601)||(18769934-18769992)
chr8 (543-601)||(19224339-19224396)
chr8 (543-601)||(36087929-36087986)
chr8 (543-605)||(33561128-33561187)
chr8 (550-603)||(27392222-27392272)
chr8 (93-226)||(29290905-29291039)
chr8 (319-380)||(23586728-23586788)
chr8 (543-592)||(26110649-26110698)
chr8 (543-592)||(26120324-26120372)
chr8 (543-601)||(19428333-19428390)
chr8 (76-348)||(20049562-20049831)
chr8 (488-532)||(20049938-20049982)
chr8 (318-381)||(30213769-30213833)
chr8 (543-601)||(34275468-34275523)
chr8 (319-410)||(14547676-14547767)
chr8 (543-601)||(21540104-21540163)
chr8 (321-380)||(23433615-23433673)
chr8 (551-601)||(23792640-23792691)
chr8 (153-226)||(30213939-30214014)
chr8 (543-592)||(13697494-13697541)
chr8 (543-592)||(23580697-23580744)
chr8 (308-377)||(33929241-33929310)
chr8 (560-601)||(20256488-20256529)
chr8 (545-601)||(29378756-29378807)
[»] chr6 (22 HSPs)
chr6 (95-181)||(12870441-12870526)
chr6 (543-601)||(24717723-24717779)
chr6 (543-601)||(1902083-1902136)
chr6 (543-601)||(7811192-7811250)
chr6 (543-601)||(14070942-14071000)
chr6 (543-601)||(26043559-26043616)
chr6 (95-176)||(8862888-8862969)
chr6 (543-601)||(27383785-27383839)
chr6 (543-601)||(27474169-27474223)
chr6 (543-601)||(27503667-27503721)
chr6 (543-601)||(25678760-25678815)
chr6 (543-601)||(9934404-9934463)
chr6 (543-601)||(17046930-17046989)
chr6 (553-601)||(17304178-17304222)
chr6 (543-604)||(17742496-17742550)
chr6 (543-601)||(25787047-25787106)
chr6 (543-592)||(16929806-16929853)
chr6 (576-605)||(16124351-16124380)
chr6 (543-592)||(16958975-16959024)
chr6 (543-592)||(26024813-26024861)
chr6 (543-592)||(26035387-26035435)
chr6 (553-601)||(19469819-19469866)
[»] chr5 (19 HSPs)
chr5 (543-601)||(23393302-23393359)
chr5 (198-273)||(19642384-19642459)
chr5 (312-406)||(22747794-22747887)
chr5 (543-592)||(22686909-22686958)
chr5 (543-601)||(36097982-36098042)
chr5 (543-592)||(40391256-40391305)
chr5 (98-181)||(20253497-20253580)
chr5 (543-601)||(20798598-20798659)
chr5 (543-601)||(13403502-13403555)
chr5 (543-592)||(23363010-23363057)
chr5 (198-250)||(6037694-6037747)
chr5 (198-250)||(20689786-20689839)
chr5 (543-592)||(24808815-24808863)
chr5 (543-601)||(34063522-34063582)
chr5 (543-592)||(39365382-39365431)
chr5 (543-601)||(9336854-9336908)
chr5 (198-285)||(17241254-17241341)
chr5 (121-169)||(19990202-19990250)
chr5 (576-604)||(22000944-22000972)
[»] scaffold0655 (1 HSPs)
scaffold0655 (543-602)||(4265-4322)
[»] scaffold0011 (1 HSPs)
scaffold0011 (553-601)||(66278-66325)
[»] scaffold0008 (1 HSPs)
scaffold0008 (307-377)||(9842-9913)
[»] scaffold0149 (1 HSPs)
scaffold0149 (543-602)||(38792-38850)
[»] scaffold0027 (1 HSPs)
scaffold0027 (543-592)||(7661-7710)
[»] scaffold0530 (1 HSPs)
scaffold0530 (553-601)||(2888-2936)
[»] scaffold0010 (1 HSPs)
scaffold0010 (198-289)||(135719-135810)
[»] scaffold0050 (1 HSPs)
scaffold0050 (543-604)||(34807-34861)
[»] scaffold0273 (1 HSPs)
scaffold0273 (576-606)||(4882-4912)
[»] scaffold1321 (1 HSPs)
scaffold1321 (543-604)||(1815-1875)
[»] scaffold1263 (1 HSPs)
scaffold1263 (543-604)||(2008-2068)
[»] scaffold0297 (1 HSPs)
scaffold0297 (564-601)||(9146-9183)
[»] scaffold0001 (1 HSPs)
scaffold0001 (543-599)||(29592-29651)
[»] scaffold0040 (1 HSPs)
scaffold0040 (553-603)||(2942-2989)


Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 639
Target Start/End: Complemental strand, 17133735 - 17133106
Alignment:
Q  12 ataggggtataaattacgtgttcaatttatatatgcggtctagttttgtaaataaatttgaaattcattttacatgtactcttactctgtcaaattatat 111  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17133735 ataggggtataaaatacgtgttcaatttatatatgcggtctagttttgtaaataaatttgaaattcattttacaagtactcttactctgtcaaattatat 17133636  T
Q  112 agctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaacttcgtacacctgtgattg 211  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17133635 agctcacaaacacttggagaaattcttacaaactttaataacttagaatttcttaagtatcagaagtcatatgaacttaaacttcgtacacctgtgattg 17133536  T
Q  212 tatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagtcttttactttgtgt 311  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| | |||    
T  17133535 tatatcaattgtaaaatgcaatatcttttatttgattaaacttagattgtagaagtctcttttttgtgtgattgagcagtagaagtcttttactatatgt 17133436  T
Q  312 ttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataatttgt 411  Q
    ||||||||||||||||||||||||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17133435 ttgagtaaattgtaatcttgtgtgattacagtgaaaattcattgaaagtgcaaggggactggactactcttggtttatgagaggaagcaatataatttgt 17133336  T
Q  412 tagtgtcgnnnnnnnnnnnnnnnnnnnnnnttgtgtcgaagttattttcgctgcatacactatttcaaaacctgatagaactttgtttctcatcagactc 511  Q
    ||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17133335 tagtgtcgtctctttctctcttatctctctttgtgtcgaagttattttcgctgcatacactatttcaaaacctgatagaactttgtttctcgtgagactc 17133236  T
Q  512 taaactatttttatacacttagg-aaagttttagaaaaggaaaacacaattcaa-ccccccagccgcccttcttgtgtttttctcaccttcatattagag 609  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  17133235 taaactatttttatacacttaggaaaaattttagaaaaggaaaacacaattcaacccccccaaccgcccttcttatatttttctcaccttcatattagag 17133136  T
Q  610 tatcatcgaaggattcccttgtttgccttt 639  Q
    ||||| ||||||||||||||||||||||||    
T  17133135 tatcaccgaaggattcccttgtttgccttt 17133106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 99 - 409
Target Start/End: Complemental strand, 8502168 - 8501855
Alignment:
Q  99 tgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaacttcgt 198  Q
    |||||||||| ||||| || | ||| || |||||||||||||||| ||| ||| |||| |||||||||||||| | ||||||||| |||| || |||| |    
T  8502168 tgtcaaattaaatagcgcataaacaattagagaaattcttacaaatttttatatcttagaatttcttaagtattataagtcatctaaactaaaccttctt 8502069  T
Q  199 acacctgtgattgtatatcaagtgtaaaatgcaata----tcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatga 294  Q
    |||| | |||||||||||||| ||||||  |||| |    | |||||||||||||  ||   ||| || |||||||||| ||||| |||||| || ||||    
T  8502068 acacatatgattgtatatcaaatgtaaa--gcaacaattcttttttatttgattacgctctgattatataagtctctttcttgtgggattgaacaaatga 8501971  T
Q  295 agtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgaga 393  Q
    | ||| |||||| ||||||| || |||||||||||| ||| ||||| ||| |||||   |||||||||||||||  |||||||||||| ||||| |||||    
T  8501970 attctcttacttatgtgtttaagcaaattgtaatctagtgagattatagtaaaaattccttggaagtgcaaggggtctggactactctcggtttgtgaga 8501871  T
Q  394 ggaaacaatataattt 409  Q
    |||| || ||||||||    
T  8501870 ggaatcagtataattt 8501855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 93 - 410
Target Start/End: Complemental strand, 43358016 - 43357700
Alignment:
Q  93 ttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaa 192  Q
    ||||| ||||||| |||||| | || | |||||| || ||||| ||||||| ||| |||  ||| |||||||||||||||||||||||| ||||||||||    
T  43358016 ttactttgtcaaagtatatatcacataaacacttagataaatttttacaaacttttatattttagaatttcttaagtatcagaagtcatttgaacttaaa 43357917  T
Q  193 cttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagat 292  Q
    |||| |||| || |||||||||||||| ||||||     || |||| |||||| ||||||||  |||||| |||| ||||  |||||||| |||| | |     
T  43357916 cttcttacaactatgattgtatatcaattgtaaatcatgatctcttctatttg-ttaaactttgattgtacaagtatcttccttgtgtgaatgagaaaag 43357818  T
Q  293 gaagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatga 391  Q
    |||||||||||||| |||||||||| |||||||||| ||| | ||||| |||||||||   |||||||||||||   | ||||||||||| | | | |||    
T  43357817 gaagtcttttacttgtgtgtttgagaaaattgtaat-ttgggagattatagtgaaaattctttggaagtgcaagttgattggactactctcgatctgtga 43357719  T
Q  392 gaggaaacaatataatttg 410  Q
    ||||||  | |||||||||    
T  43357718 gaggaactagtataatttg 43357700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 14116374 - 14116288
Alignment:
Q  293 gaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaa-atcggttggaagtgcaagggaactggactac 378  Q
    ||||| ||||||| | ||||| || |||||||||||||||||||||| ||||||| |||  |||||||||||||||||||| |||||    
T  14116374 gaagtattttactgtttgtttaagaaaattgtaatcttgtgtgattatagtgaaatatccattggaagtgcaagggaactgaactac 14116288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 19052797 - 19052734
Alignment:
Q  319 aattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttg 383  Q
    ||||||||||||||||||||| ||||||| ||  ||||||||||||||| |||||||||||||||    
T  19052797 aattgtaatcttgtgtgattatagtgaaa-tcccttggaagtgcaaggggactggactactcttg 19052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 605
Target Start/End: Original strand, 3189165 - 3189221
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatatt 605  Q
    |||||| |||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  3189165 agaaaaagaaaacacaattcaacccccc------ccttcttgtgtttttctcaccttcatatt 3189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 24716257 - 24716340
Alignment:
Q  98 ctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcat 181  Q
    |||| ||||||| |||| |||| ||||||  | |||| |||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  24716257 ctgtaaaattatgtagcgcacaaacacttaaataaatacttacaaactttcatatcttataatttcttaagtatcagaagtcat 24716340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 29030331 - 29030384
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  29030331 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcaccttca 29030384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 29042445 - 29042499
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  29042445 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 29042499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 19143791 - 19143846
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||||||   || | ||||||||||||||||||||||||    
T  19143791 agaaaaagaaaacacaattcaaccccc---cccctcttcttgtgtttttctcaccttca 19143846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 11011604 - 11011659
Alignment:
Q  293 gaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa 348  Q
    ||||||| ||| | |||||||||| |||||||||||||||||||||| ||| ||||    
T  11011604 gaagtctcttagtgtgtgtttgagaaaattgtaatcttgtgtgattatagtaaaaa 11011659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 17743184 - 17743109
Alignment:
Q  319 aattgtaatcttgtgtgattacagtg-aaaatcggttggaagtgcaagggaactggactactcttggtttatgaga 393  Q
    ||||||||||||||||||||| |||| |||||| |||| |||||||| |||||| ||||   ||||| ||||||||    
T  17743184 aattgtaatcttgtgtgattatagtgaaaaatctgttgaaagtgcaatggaactagactgaccttggattatgaga 17743109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 604
Target Start/End: Complemental strand, 23508615 - 23508561
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatat 604  Q
    |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  23508615 agaaaaagaaaacacaattcaacccccc-------cttcttgtgtttttctcaccttcatat 23508561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 10329191 - 10329236
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcacctt 599  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  10329191 aacacaattcaaccccccatcc-cccttcttgtgttgttctcacctt 10329236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 11900341 - 11900291
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||||||||||||||   ||  |||||||||||||||||||||||||||    
T  11900341 aacacaattcaaccccctccccctccttcttgtgtttttctcaccttcata 11900291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 24028875 - 24028922
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  24028875 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 24028922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 17928174 - 17928126
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  17928174 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 17928126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 49503384 - 49503336
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  49503384 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 49503336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 49509449 - 49509401
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  49509449 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 49509401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 13977922 - 13977997
Alignment:
Q  321 ttgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaa 397  Q
    ||||||||||  ||||||| |||||||||   ||| ||||||||||| ||| ||||||||| ||||| |||||||||    
T  13977922 ttgtaatctttagtgattatagtgaaaattccttg-aagtgcaaggggactagactactctcggtttgtgagaggaa 13977997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Complemental strand, 20976671 - 20976643
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  20976671 cccttcttgtgtttttctcaccttcatat 20976643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 601
Target Start/End: Complemental strand, 24618915 - 24618887
Alignment:
Q  573 ccgcccttcttgtgtttttctcaccttca 601  Q
    |||||||||||||||||||||||||||||    
T  24618915 ccgcccttcttgtgtttttctcaccttca 24618887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 25008383 - 25008326
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccct-tcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||  |||||||||||||||||||||    
T  25008383 agaaaaagaaaacacaattcaacccccc--cccccctcccttgtgtttttctcaccttca 25008326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Original strand, 56533874 - 56533902
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  56533874 cccttcttgtgtttttctcaccttcatat 56533902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 93 - 407
Target Start/End: Complemental strand, 9124165 - 9123855
Alignment:
Q  93 ttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaa 192  Q
    |||||||||||||||| ||||| |||| |||||| || ||||||| ||||| |||| || |||| |||||||   | |||| |  |||| |||||||||     
T  9124165 ttactctgtcaaattacatagcacacaaacacttagaaaaattctcacaaatttta-tatcttagaatttct---gcatcaaatatcatttgaacttaat 9124070  T
Q  193 cttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagat 292  Q
    |||| ||||||| |||||||||||||||||| |||  ||||||||||||||| |||||||||| ||| ||||||| | ||| |||||| |||||||| |     
T  9124069 cttcttacacctctgattgtatatcaagtgtgaaacacaatatcttttatttaattaaacttatattatagaagtttatttcttgtgtaattgagcaaag 9123970  T
Q  293 gaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgag 392  Q
    ||||||| ||||| |||||||||| || ||||||| |||||| |||| |||||| | |  |||||||||||||| || |||||||||||||| || ||||    
T  9123969 gaagtctcttactatgtgtttgagcaagttgtaattttgtgtaattatagtgaagaacctttggaagtgcaaggaaaatggactactcttggcttgtgag 9123870  T
Q  393 aggaaacaatataat 407  Q
    || || |||||||||    
T  9123869 agaaaccaatataat 9123855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 198 - 365
Target Start/End: Original strand, 42297968 - 42298136
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagt 297  Q
    ||||||| ||| | |||||||||||||||   |||| | | ||||||||||||||||| ||| ||||||||||||| |||| |||||||||| | |||||    
T  42297968 tacacctctgagtatatatcaagtgtaaacaacaatctttcttatttgattaaacttagattatagaagtctctttcttgtatgattgagcaaaggaagt 42298067  T
Q  298 cttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaag 365  Q
    || |||||| |||||||||  |||||||||||||||| ||||| ||||||||||  |||||| ||||||    
T  42298068 ctcttacttatgtgtttgatcaaattgtaatcttgtgcgattatagtgaaaatccattggaaatgcaag 42298136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 206 - 387
Target Start/End: Complemental strand, 12060593 - 12060411
Alignment:
Q  206 tgattgtatatcaagtgtaaaatgcaatatctttt-atttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagtcttttac 304  Q
    |||||||||||||||||||||   |||| |||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||| | |||| || ||||    
T  12060593 tgattgtatatcaagtgtaaacaccaatctctttttatttgattaaacttatattgtagaagtctttttcttgtgtgattgagcaaaagaagcctcttac 12060494  T
Q  305 tt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggttt 387  Q
    || |||||||||| || |||||||  |||| ||||| ||||||||||  ||| || || ||||| |||| |||||||| |||||    
T  12060493 ttgtgtgtttgagcaatttgtaat-atgtgagattatagtgaaaatcttttgaaaatgtaaggggactgaactactctcggttt 12060411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 76 - 329
Target Start/End: Original strand, 24228074 - 24228327
Alignment:
Q  76 tcattttacatgtactcttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcaga 175  Q
    |||||||| | || || |||||||||||  ||||||||| |||| |  ||| ||||||||||||  || ||| ||| |||| ||||| |||||| | | |    
T  24228074 tcattttaaaagttcttttactctgtcatcttatatagcgcacaaaagcttagagaaattcttatgaacttttatatcttagaattttttaagtcttaaa 24228173  T
Q  176 agtcatctgaacttaaacttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatc--ttttatttgattaaacttacattgtagaagtctcttt 273  Q
    | |||||||||| |||||||| || | || ||||||| ||||||||||||    || ||||  ||||||||||||||||||| ||||||||| |||||||    
T  24228174 attcatctgaacctaaacttcttaaatctctgattgtgtatcaagtgtaa---ccactatctattttatttgattaaacttagattgtagaattctcttt 24228270  T
Q  274 tttgtgtgattgagcagatgaagtcttttactt-tgtgtttgagtaaattgtaatct 329  Q
     |||||||| |||||| |   ||||| |||||| || ||||||| ||||| ||||||    
T  24228271 cttgtgtgaatgagcaaagagagtctcttacttgtgcgtttgagaaaattctaatct 24228327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 30489625 - 30489684
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  30489625 agaaaaagaaaacacaattcaacccccccccc-cccttcttgtgtttttctcaccttcata 30489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 24110046 - 24110100
Alignment:
Q  355 ggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataattt 409  Q
    ||||||||||||| ||||||||||||||||||| || |||||| |||||||||||    
T  24110046 ggaagtgcaaggggactggactactcttggtttgtgggaggaaccaatataattt 24110100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 23958997 - 23958921
Alignment:
Q  332 tgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataatt 408  Q
    |||||||| | ||||||||  ||||||||||||||| |||||||||||| ||| || | ||||||| ||||||||||    
T  23958997 tgtgattataatgaaaatctcttggaagtgcaaggggactggactactcctggattgtaagaggaaccaatataatt 23958921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 13892245 - 13892140
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagt 297  Q
    ||||||| | |||||||||||||||||||| ||| | || |||||||| ||||| |   ||||||||||| |||| |||||||| ||||||| |||||||    
T  13892245 tacacctctaattgtatatcaagtgtaaaa-gcattctcatttatttg-ttaaattctaattgtagaagtttcttatttgtgtgtttgagcaaatgaagt 13892148  T
Q  298 cttttact 305  Q
    || |||||    
T  13892147 ctcttact 13892140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 14032370 - 14032265
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagt 297  Q
    ||||||| | |||||||||||||||||||| ||| | || |||||||| ||||| |   ||||||||||| |||| |||||||| ||||||| |||||||    
T  14032370 tacacctctaattgtatatcaagtgtaaaa-gcattctcatttatttg-ttaaattctaattgtagaagtttcttatttgtgtgtttgagcaaatgaagt 14032273  T
Q  298 cttttact 305  Q
    || |||||    
T  14032272 ctcttact 14032265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 24428386 - 24428445
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccc-ttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  24428386 agaaaaagaaaacacaattcaacccccccccccccctttcttgtgtttttctcaccttca 24428445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 12060681 - 12060591
Alignment:
Q  92 cttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctga 185  Q
    |||||| |||||||||||||||  |||| ||| || |||||||||||||||| | |  || |||| |||||| |||||||||||||||||||||    
T  12060681 cttactttgtcaaattatatagtgcacaaacatttagagaaattcttacaaactct--tatcttagaatttc-taagtatcagaagtcatctga 12060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 19355744 - 19355687
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || || |||||||||||||||||||||||    
T  19355744 agaaaaagaaaacacaattcaacccccc-cccccctttcttgtgtttttctcaccttca 19355687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 22615090 - 22615032
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||| ||||||||||||||  || ||| ||||||||||||||||||||||    
T  22615090 agaaaaagaaaacgcaattcaaccccccccccccccctcttgtgtttttctcaccttca 22615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 16768373 - 16768324
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  16768373 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 16768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 33013968 - 33014016
Alignment:
Q  237 ttttatttgattaaacttacattgtagaagtctcttttttgtgtgattg 285  Q
    |||||||||||| || ||| ||||||||||||||||| |||||||||||    
T  33013968 ttttatttgatttaagttagattgtagaagtctctttcttgtgtgattg 33014016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 12845862 - 12845917
Alignment:
Q  293 gaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa 348  Q
    ||||||| || || ||| |||||||||||| |||||||||||||||| ||||||||    
T  12845862 gaagtctcttgctatgtttttgagtaaattataatcttgtgtgattaaagtgaaaa 12845917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 27760903 - 27760966
Alignment:
Q  333 gtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagagga 396  Q
    ||||||| ||||||||||  | ||||||||||  | |||||||| |||||||||||||||||||    
T  27760903 gtgattatagtgaaaatctctaggaagtgcaaaaggactggactgctcttggtttatgagagga 27760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 4219911 - 4219864
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  4219911 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 4219864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Complemental strand, 19539672 - 19539643
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatt 605  Q
    ||||||||||||||||||||||||||||||    
T  19539672 cccttcttgtgtttttctcaccttcatatt 19539643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 20567476 - 20567416
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccct--tcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||   ||||||||||||||||||||||    
T  20567476 agaaaaagaaaacacaattcaaccccccccccccccccctcttgtgtttttctcaccttca 20567416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 24838340 - 24838286
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||| |||||||||||||||||    ||| ||||||||||||||||||||||    
T  24838340 agaaaaagaaaccacaattcaacccccca----cccctcttgtgtttttctcaccttca 24838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 8685070 - 8685015
Alignment:
Q  324 taatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactc 380  Q
    ||||| |||||||||| ||||||| ||  ||||||||||||||| ||||||||||||    
T  8685070 taatcatgtgtgattatagtgaaa-tcccttggaagtgcaaggggactggactactc 8685015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Complemental strand, 22316822 - 22316794
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  22316822 cccttcttgtgtttttctcaccttcatat 22316794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 24802454 - 24802501
Alignment:
Q  551 aaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||||   | |||||||||||||||||| |||||||    
T  24802454 aaaacacaattcaacccccc---cccccttcttgtgtttttctgaccttca 24802501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 27766152 - 27766211
Alignment:
Q  319 aattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactact 379  Q
    ||||||||||| ||||||||| ||||||| ||  ||||||||| ||||| |||||||||||    
T  27766152 aattgtaatctagtgtgattatagtgaaattc-cttggaagtgtaaggggactggactact 27766211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 76 - 350
Target Start/End: Complemental strand, 10656194 - 10655921
Alignment:
Q  76 tcattttacatgtactcttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcaga 175  Q
    |||||||||| || | |||| |||||||| ||| ||||| || | ||| || |||||||||||||||| ||| ||  || | ||||||||||||||||||    
T  10656194 tcattttacaagtgcgcttaatctgtcaa-ttaaatagcgcataaacatttagagaaattcttacaaacttttatctctcagaatttcttaagtatcaga 10656096  T
Q  176 agtcatctgaacttaaacttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttt 275  Q
    |||||| | | |||||| ||| |||||||  |||||||||||||||||||||  |||| |  |||||||| |||||||   |||| |||||||||||| |    
T  10656095 agtcatataagcttaaatttcttacacctcagattgtatatcaagtgtaaaacacaatcttgtttatttg-ttaaactctgattgcagaagtctctttct 10655997  T
Q  276 tgtgtgattgagcagatgaagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatc 350  Q
     ||||||||  | | ||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  10655996 cgtgtgattaggtaaatgaagtctcttacttatgtgtttgagtaaattgtaatctcgtgtgattatagtgaaaatc 10655921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 93 - 387
Target Start/End: Complemental strand, 25517317 - 25517024
Alignment:
Q  93 ttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaa 192  Q
    |||||||||| ||| ||||| | |||| || ||| |||||||||||||||| ||| ||| |||| |||||||||||||| ||||||||| ||||||||||    
T  25517317 ttactctgtcgaataatataacgcacaaactcttagagaaattcttacaaactttcatatcttagaatttcttaagtattagaagtcatatgaacttaaa 25517218  T
Q  193 cttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagat 292  Q
     ||| ||||| | |||||||||||||| ||| |||  |||| |  |||||||| ||||| |   ||||||||| |||  || ||||||||||||||| ||    
T  25517217 tttcttacacatctgattgtatatcaactgt-aaagacaatcttatttatttg-ttaaattattattgtagaattcttcttcttgtgtgattgagcaaat 25517120  T
Q  293 gaagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggttt 387  Q
     ||||||||||||| ||||||| || ||| |||| | | ||| ||||| ||||||||||  || ||| |||||||| | |||| |||||| |||||    
T  25517119 aaagtcttttacttgtgtgtttaagaaaactgtagtttagtgagattatagtgaaaatctcttcgaaatgcaaggggattggagtactctcggttt 25517024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 364
Target Start/End: Original strand, 18581949 - 18582181
Alignment:
Q  131 aaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaacttcgtacacctgtgattgtatatcaagtgtaaaatgc 230  Q
    ||||||||||||| ||| ||  |||| |||||||||||| ||||||||||| |||||||||| ||| ||||| | | |||||||||||| |||||||  |    
T  18581949 aaattcttacaaacttttatttcttagaatttcttaagtctcagaagtcatatgaacttaaatttcctacacgtctaattgtatatcaattgtaaaa-ac 18582047  T
Q  231 aatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagtcttttactt-tgtgtttgagtaaattgtaatct 329  Q
    ||| |  |||||||| | ||||||   |||||||||||||||| |||||||||||| || |  |||| |||||||| |||||||||| ||| |||||| |    
T  18582048 aatcttatttatttg-taaaactttgtttgtagaagtctctttcttgtgtgattgaacaaaataagtattttacttatgtgtttgagcaaaatgtaatat 18582146  T
Q  330 tgtgtgattacagtgaaaatcggttggaagtgcaa 364  Q
     ||| ||||| ||||||||||  ||| ||||||||    
T  18582147 agtgagattatagtgaaaatctcttgaaagtgcaa 18582181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 41133443 - 41133501
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  41133443 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttctcaccttca 41133501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 3171002 - 3170947
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  3171002 agaaaaagaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttca 3170947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 3181604 - 3181549
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  3181604 agaaaaagaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttca 3181549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 9750044 - 9750099
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  9750044 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcaccttcata 9750099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 21205700 - 21205748
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||    
T  21205700 aacacaattcaaccccccccccccccttcttgtgtttttctcaccttca 21205748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 36099918 - 36099863
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  36099918 agaaaaagaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttca 36099863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 28379197 - 28379141
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  28379197 agaaaaagaaaacacaattcaacccccc--ccccccctcttgtgtttttctcaccttca 28379141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 4251395 - 4251456
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcc-cttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||  || || ||||||||||||||| ||||||||||    
T  4251395 agaaaaagaaaacacaattcaaccccccccccccctcttcttgtgtttttcacaccttcata 4251456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 34190126 - 34190077
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  34190126 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 34190077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 605
Target Start/End: Original strand, 18382728 - 18382783
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatatt 605  Q
    |||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  18382728 agaaaaagaaaacacaattcaacccccc-------cttcttgtgtttttctcaccttcatatt 18382783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 410
Target Start/End: Original strand, 26858781 - 26858885
Alignment:
Q  307 tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa-tcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatata 405  Q
    |||||||||| ||||||||| || ||||||||| |||||||| ||  ||||||||||||||| |||| ||||  ||||  || |||| |||| ||| |||    
T  26858781 tgtgtttgagaaaattgtaacctagtgtgattatagtgaaaaatcttttggaagtgcaaggggactgaactaaccttgaattgtgaggggaaccaagata 26858880  T
Q  406 atttg 410  Q
    |||||    
T  26858881 atttg 26858885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 35895807 - 35895717
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagca 289  Q
    ||||||| ||||||||| ||||||||||| |  |  || ||||||||||||||  ||| ||||||||||||||||  ||||||| |||||||    
T  35895807 tacacctttgattgtatctcaagtgtaaattaaatgatattttatttgattaat-ttagattgtagaagtctcttgcttgtgtgcttgagca 35895717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 605
Target Start/End: Original strand, 52351484 - 52351544
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatatt 605  Q
    |||||| ||||||||||||| |||||||  || ||  ||||||||||||||||||||||||||    
T  52351484 agaaaaagaaaacacaattcgacccccc--ccccctctcttgtgtttttctcaccttcatatt 52351544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 607
Target Start/End: Complemental strand, 12283614 - 12283584
Alignment:
Q  577 ccttcttgtgtttttctcaccttcatattag 607  Q
    |||||||||||||||||||||||||||||||    
T  12283614 ccttcttgtgtttttctcaccttcatattag 12283584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 16710217 - 16710170
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  16710217 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 16710170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 21863042 - 21862995
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  21863042 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 21862995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 35012310 - 35012263
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  35012310 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 35012263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 674829 - 674770
Alignment:
Q  543 agaaaaggaaaacacaattcaaccc---cccagccgcccttcttgtgtttttctcacctt 599  Q
    |||||| ||||||||||||||||||   |||  || ||||||||||||||||||||||||    
T  674829 agaaaaagaaaacacaattcaaccctccccccccctcccttcttgtgtttttctcacctt 674770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 21215515 - 21215564
Alignment:
Q  553 aacacaattcaaccccccagccgccc-ttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  21215515 aacacaattcaacccccccccccccccttcttgtgtttttctcaccttca 21215564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 22610802 - 22610856
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||| ||||||||||     ||||||||||||||||||||||||||    
T  22610802 agaaaaagaaaacacaactcaaccccccc----cccttcttgtgtttttctcaccttca 22610856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 34487789 - 34487729
Alignment:
Q  318 aaattgtaatcttgtgtgattacagtgaaaa-tcggttggaagtgcaagggaactggacta 377  Q
    |||||||||||||||||||||| |||||||| ||  | ||||||||||||  |||||||||    
T  34487789 aaattgtaatcttgtgtgattatagtgaaaattccatgggaagtgcaaggagactggacta 34487729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 92 - 316
Target Start/End: Original strand, 7002 - 7218
Alignment:
Q  92 cttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaa 191  Q
    |||||||| |||||||||||||| |||| |||||| |||||||| ||| ||| |||| || |||| |||||||||||||| |       |||||||||||    
T  7002 cttactctatcaaattatatagcacacaaacacttagagaaattattaaaaacttta-tatcttagaatttcttaagtatta-------tctgaacttaa 7093  T
Q  192 acttcgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcaga 291  Q
     |||| ||||||| | ||| ||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||| |||| |    
T  7094 tcttcttacacctttaattatatatcaagtgtaaaacacaatctcttttatttgattaaacttagattgtagaagtctttttgttgtgtgattaagcaaa 7193  T
Q  292 tgaagtcttttactttgtgtttgag 316  Q
     ||||||| ||||| ||||||||||    
T  7194 ggaagtctcttactgtgtgtttgag 7218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 92 - 409
Target Start/End: Complemental strand, 17880075 - 17879758
Alignment:
Q  92 cttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaa 191  Q
    ||||||||||||||||||||||| |||| ||||||  | ||||||||||||| ||| |||  ||| |||||||||||||||||||||||| |||||||||    
T  17880075 cttactctgtcaaattatatagcacacaaacacttacataaattcttacaaactttcatatattagaatttcttaagtatcagaagtcatatgaacttaa 17879976  T
Q  192 acttcgtacacctgtgattgtatatcaagtgtaaaatgcaat-atcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcag 290  Q
    | ||| ||||||| ||||| |||||||||||||||   ||||  | ||||||||| ||||| |   ||||||||||| |||||   | ||||||||| |     
T  17879975 atttcttacacctctgattatatatcaagtgtaaaccacaatcttattttatttg-ttaaattattattgtagaagtatctttcaagagtgattgagaaa 17879877  T
Q  291 atgaagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttat 389  Q
    ||||||||| |||||| ||||||| |  ||||||||||  |||  ||||| ||||||||||  || |||||||||| | | || |||||| ||||||| |    
T  17879876 atgaagtctcttacttgtgtgtttaaacaaattgtaat-atgtaagattatagtgaaaatctcttagaagtgcaagtggattgtactactgttggtttgt 17879778  T
Q  390 gagaggaaacaatataattt 409  Q
    | | |||| ||| |||||||    
T  17879777 gggtggaaccaacataattt 17879758  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 128 - 406
Target Start/End: Original strand, 8309646 - 8309922
Alignment:
Q  128 gagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcatctgaacttaaacttcgtacacctgtgattgtatatcaagtgtaaaa 227  Q
    |||||||||||||||| ||| ||| |||| || || |||||  ||| ||||||| ||||| | |  | | ||||||| ||||||||||||||||||||||    
T  8309646 gagaaattcttacaaactttcatatcttataaattattaagcttcataagtcatttgaacattatttgcttacacctctgattgtatatcaagtgtaaaa 8309745  T
Q  228 tgcaatatcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagcagatgaagtcttttac-tttgtgtttgagtaaattgtaa 326  Q
       ||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| | ||||| | || | |||||  ||||| |||||||||    
T  8309746 -caaatatattttatttgattaaacttagatt-tagaagtctctttcttttgtgattgagcaaacgaagtatcttgcttttgtacttgagaaaattgtaa 8309843  T
Q  327 tcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataa 406  Q
    | | ||| ||||| |||||||  |  ||||||||||||||| | ||||||||||| ||||| || ||||||  |||||||    
T  8309844 t-tcgtgagattatagtgaaatccctttggaagtgcaaggggattggactactctcggtttgtgggaggaacaaatataa 8309922  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 3477202 - 3477259
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  3477202 agaaaaagaaaacacaattcaacccccccccc-cccttcttgtgtttttctcaccttca 3477259  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 1775571 - 1775516
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  1775571 agaaaaagaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttca 1775516  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 1986976 - 1986921
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  1986976 agaaaaagaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttca 1986921  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 1997597 - 1997544
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  1997597 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcaccttca 1997544  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 42875889 - 42875836
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  42875889 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcaccttca 42875836  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 45931031 - 45931085
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  45931031 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 45931085  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 10677112 - 10677064
Alignment:
Q  95 actctgtcaaattatatagctcacagacacttggagaaattcttacaaa 143  Q
    |||||||||||||||||||| |||| |||||| || |||||||||||||    
T  10677112 actctgtcaaattatatagcacacaaacactttgaaaaattcttacaaa 10677064  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 608
Target Start/End: Original strand, 13259381 - 13259413
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatattaga 608  Q
    |||||||||||||||||||||||||||||||||    
T  13259381 cccttcttgtgtttttctcaccttcatattaga 13259413  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 11015235 - 11015177
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccctt-cttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||| ||||| || ||||| |||||||||||||||||||||    
T  11015235 agaaaaagaaaacacaattcaac-ccccacccccccttccttgtgtttttctcaccttca 11015177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 13879388 - 13879332
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| | |||||||||||||||||||  || |||||||||| |||||||||||||||    
T  13879388 agaaaaagcaaacacaattcaacccccc--ccccccttcttgtatttttctcaccttca 13879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 19143454 - 19143524
Alignment:
Q  312 ttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttg 383  Q
    ||||| || ||||||||| | ||||||| ||||||| ||  |||||||||||||||||||| ||||||||||    
T  19143454 ttgagaaatttgtaatctagagtgattatagtgaaa-tcccttggaagtgcaagggaactgaactactcttg 19143524  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 20742853 - 20742923
Alignment:
Q  312 ttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttg 383  Q
    ||||| || ||||||||| | ||||||| ||||||| ||  |||||||||||||||||||| ||||||||||    
T  20742853 ttgagaaatttgtaatctagagtgattatagtgaaa-tcccttggaagtgcaagggaactgaactactcttg 20742923  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 31270693 - 31270634
Alignment:
Q  319 aattgtaatcttgtgtgattacagt-gaaaatcggttggaagtgcaagggaactggacta 377  Q
    ||||||||||||||||||||| ||| |||||||  || |||||||||||||||| |||||    
T  31270693 aattgtaatcttgtgtgattatagtagaaaatctcttagaagtgcaagggaactagacta 31270634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 602040 - 601987
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||| ||||||||||||||||||||||    
T  602040 agaaaaagaaaacacaattcaacccccc-----cccctcttgtgtttttctcaccttca 601987  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 2717079 - 2717135
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||| |||||||||    
T  2717079 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgttttt-tcaccttca 2717135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 8627387 - 8627340
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  8627387 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 8627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 20052792 - 20052742
Alignment:
Q  356 gaagtgcaagggaactggactactcttggtttatgagaggaaacaatataa 406  Q
    |||||||||||||||| ||||||||||| ||| || |||||| ||||||||    
T  20052792 gaagtgcaagggaactagactactcttgttttgtgggaggaaccaatataa 20052742  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 21019466 - 21019388
Alignment:
Q  330 tgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataatt 408  Q
    |||| ||||| ||| ||||||  |||||||| ||||||||||| |||||||| ||||| ||  ||||| ||||||||||    
T  21019466 tgtgagattatagttaaaatcccttggaagtacaagggaactgaactactctcggtttgtggaaggaaccaatataatt 21019388  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 606
Target Start/End: Original strand, 21284312 - 21284342
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatta 606  Q
    |||||||||||||||||||||||||||||||    
T  21284312 cccttcttgtgtttttctcaccttcatatta 21284342  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 21620692 - 21620742
Alignment:
Q  92 cttactctgtcaaattatatagctcacagacacttggagaaattcttacaa 142  Q
    ||||||||||||||||||||| | |||| | |||| |||||||||||||||    
T  21620692 cttactctgtcaaattatataacacacaaatacttagagaaattcttacaa 21620742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Complemental strand, 4493764 - 4493735
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatt 605  Q
    ||||||||||||||||||||||||||||||    
T  4493764 cccttcttgtgtttttctcaccttcatatt 4493735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 13681760 - 13681706
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||| ||||||||||||||    
T  13681760 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgattttctcaccttca 13681706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Original strand, 24883281 - 24883310
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatt 605  Q
    ||||||||||||||||||||||||||||||    
T  24883281 cccttcttgtgtttttctcaccttcatatt 24883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Complemental strand, 2499248 - 2499220
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  2499248 cccttcttgtgtttttctcaccttcatat 2499220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 10974881 - 10974937
Alignment:
Q  312 ttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaaggga 368  Q
    ||||| |||||||||||   |||||||| ||||||||||  ||||||||||||||||    
T  10974881 ttgagcaaattgtaatcagttgtgattatagtgaaaatcaattggaagtgcaaggga 10974937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Complemental strand, 11792090 - 11792062
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  11792090 cccttcttgtgtttttctcaccttcatat 11792062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 608
Target Start/End: Original strand, 13261613 - 13261645
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatattaga 608  Q
    |||||||||||||||||||||||| ||||||||    
T  13261613 cccttcttgtgtttttctcacctttatattaga 13261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Original strand, 14746557 - 14746585
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  14746557 cccttcttgtgtttttctcaccttcatat 14746585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 89418 - 89644
Alignment:
Q  76 tcattttacatgtactcttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcaga 175  Q
    |||||||||| || | |||||| |||||||||| ||||| |||| |||||| ||||||| ||||||||  || |||  ||| | ||||||||||||||||    
T  89418 tcattttacaagtgcccttactttgtcaaattaaatagcgcacaaacactttgagaaatacttacaaacctttatatattagactttcttaagtatcaga 89517  T
Q  176 agtcatctgaacttaaacttcgtacacctgtgattgtatatcaagtgtaaaa-tgcaatatcttttatttgattaaacttacattgtagaagtctctttt 274  Q
    |||||||||||  |||| ||| |||| || |||||| |||| ||||||||||   |||| | |||||||||||||||||   |||||||||||||||||     
T  89518 agtcatctgaaactaaatttcttacaactctgattgcatattaagtgtaaaacaacaatct-ttttatttgattaaactctgattgtagaagtctctttc 89616  T
Q  275 ttgtgtgattgagcagatgaagtctttt 302  Q
    ||||||||||||| | | ||||||||||    
T  89617 ttgtgtgattgaggaaaggaagtctttt 89644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 89693 - 89780
Alignment:
Q  310 gtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaa 397  Q
    ||||||| ||||||||||||||| |||||| ||||||||||  ||| ||||||||||| ||| ||| | ||| |||||||||||||||    
T  89693 gtttgagcaaattgtaatcttgtttgattaaagtgaaaatcttttgaaagtgcaaggggactagacaattctcggtttatgagaggaa 89780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 9829472 - 9829605
Alignment:
Q  92 cttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagta-tcagaagtcatctgaactta 190  Q
    ||||||||||||||||| | | | |||| |||||| ||||||||||||| |||||| ||| |||| ||||||||||||| ||||||||||| ||||||||    
T  9829472 cttactctgtcaaattacacaacacacaaacacttagagaaattcttac-aaatttcatatcttagaatttcttaagtattcagaagtcat-tgaactta 9829569  T
Q  191 aacttcgtacacctgtgattgtatatcaagtgtaaa 226  Q
    || ||  ||||||| | |||||||||||||||||||    
T  9829570 aatttattacacctctaattgtatatcaagtgtaaa 9829605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 24097714 - 24097833
Alignment:
Q  76 tcattttacatgtactcttactctgtcaaattatatagctcacagacacttg-gagaaattcttacaaaatttaataacttaaaatttcttaagtatcag 174  Q
    |||||||||| || | |||||| | |||||||||||||| |||| ||||||  |||||||||||| ||| |||    | ||||||||||||||||||||     
T  24097714 tcattttacaagtgcccttactttatcaaattatatagcgcacaaacacttaagagaaattcttataaactttttatatttaaaatttcttaagtatcat 24097813  T
Q  175 aagtcatctgaacttaaact 194  Q
    ||||||||| ||||||||||    
T  24097814 aagtcatctcaacttaaact 24097833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 7805298 - 7805356
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  7805298 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttctcaccttca 7805356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 19264337 - 19264248
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaata-tcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgag 287  Q
    ||||||| ||||||||||| |||||||||||  || | ||||||||||||||||  ||| ||||||||||||||||| |||||||||||||    
T  19264337 tacacctctgattgtatattaagtgtaaaatcaaacaatcttttatttgattaag-ttagattgtagaagtctctttcttgtgtgattgag 19264248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 27685620 - 27685516
Alignment:
Q  278 tgtgattgagcagatgaagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggact 376  Q
    ||||||| |||| | ||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||   || |||||||||| | ||| ||||    
T  27685620 tgtgattaagcaaaggaagtctcttacttgtgtgtttgagcaaattgtaatcctgtgtgattatagtgaaaattccttagaagtgcaagaggactagact 27685521  T
Q  377 actct 381  Q
    |||||    
T  27685520 actct 27685516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 605
Target Start/End: Original strand, 6501776 - 6501835
Alignment:
Q  539 ttttagaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatatt 605  Q
    |||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  6501776 ttttagaaaaagaaaacacaattcaacccccc-------cttcttgtgtttttctcaccttcatatt 6501835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 29906962 - 29907021
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||  || | ||||||||||||||||||||||||||    
T  29906962 agaaaaagaaaacacaattcaacccccccccc-ctcttcttgtgtttttctcaccttcata 29907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 29948128 - 29948187
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||  || | ||||||||||||||||||||||||||    
T  29948128 agaaaaagaaaacacaattcaacccccccccc-ctcttcttgtgtttttctcaccttcata 29948187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 29997282 - 29997341
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||| |||||||||||||||||||||  || | ||||||||||||||||||||||||||    
T  29997282 agaaaaagaaaacacaattcaacccccccccc-ctcttcttgtgtttttctcaccttcata 29997341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 9829705 - 9829615
Alignment:
Q  257 attgtagaagtctcttttttgtgtgattgagcagatgaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa 348  Q
    ||||||||||| | ||| |||||||||| || | ||||||| | ||||| |||||||||| ||||| ||||||||||||||||  |||||||    
T  9829705 attgtagaagtatatttcttgtgtgattaagaaaatgaagtttcttactgtgtgtttgag-aaattataatcttgtgtgattaatgtgaaaa 9829615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 13147501 - 13147445
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||    
T  13147501 agaaaaagaaaacacaattcaacccctc--ccccccttcttgtgtttttctcaccttca 13147445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 15194787 - 15194844
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  15194787 agaaaaagaaaacacaattcaacccccc-cccccccctcttgtgtttttctcaccttca 15194844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 9381439 - 9381493
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  9381439 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 9381493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 7795387 - 7795448
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccc---ttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||   |||||||||||||||||||||||    
T  7795387 agaaaaagaaaacacaattcaacccccccccccccccccttcttgtgtttttctcaccttca 7795448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 5520328 - 5520281
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  5520328 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 5520281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 20673973 - 20674021
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  20673973 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 20674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 20720564 - 20720516
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  20720564 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 20720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 24669931 - 24669883
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  24669931 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 24669883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Complemental strand, 52919647 - 52919618
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatt 605  Q
    ||||||||||||||||||||||||||||||    
T  52919647 cccttcttgtgtttttctcaccttcatatt 52919618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 55212801 - 55212705
Alignment:
Q  95 actctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataa--cttaaaatttcttaagtatcagaagtcatctgaactt 189  Q
    ||||||||||| || || | | ||| |||||||||||||||| || ||| ||| |||   |||| ||||||||||||| |||||||||||| |||||    
T  55212801 actctgtcaaaatacatggtttacaaacacttggagaaattcctataaactttcatatttcttagaatttcttaagtaccagaagtcatctaaactt 55212705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Original strand, 15663544 - 15663572
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  15663544 cccttcttgtgtttttctcaccttcatat 15663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 31779358 - 31779283
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaat-atcttttatttgattaaacttacattgtagaagtctcttt 273  Q
    ||||||| ||||||||||||||||||||||  |||| || |||||||| ||| || ||| |||| ||||||||||||    
T  31779358 tacacctttgattgtatatcaagtgtaaaacccaataatattttatttaatt-aagttagattgcagaagtctcttt 31779283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 348
Target Start/End: Complemental strand, 27137930 - 27137734
Alignment:
Q  153 cttaaaatttcttaagtatc-agaagtcatctgaacttaaactt-cgtacacctgtgattgtatatcaagtgtaaaatgcaatatcttttatttgattaa 250  Q
    |||| ||||||||||||||  ||||||||| |  |||| ||||| | ||||||| || ||||||||||| |||||||  |||| ||||||||||||||||    
T  27137930 cttagaatttcttaagtatttagaagtcattttcactttaactttcttacacctttggttgtatatcaaatgtaaaaa-caatctcttttatttgattaa 27137832  T
Q  251 acttacattgtagaagtctcttttttgtgtgattgagcagatgaagtcttttactttgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa 348  Q
    || || |||||||||||||| |  ||||||| ||||| | |  ||  || ||| | |||||||||| ||||||||||||||||||| || ||||||||    
T  27137831 acataaattgtagaagtctcatagttgtgtgtttgagaaaagaaaaactcttattgtgtgtttgagcaaattgtaatcttgtgtgactatagtgaaaa 27137734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 18769934 - 18769992
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  18769934 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttctcaccttca 18769992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 19224396 - 19224339
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  19224396 agaaaaagaaaacacaattcaacccccccccc-cccttcttgtgtttttctcaccttca 19224339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 36087986 - 36087929
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  36087986 agaaaaagaaaacacaattcaacccccccccc-cccttcttgtgtttttctcaccttca 36087929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 605
Target Start/End: Original strand, 33561128 - 33561187
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatatt 605  Q
    |||||| | |||||||||||||||||||| ||   ||||||||||||||||||||||||||||    
T  33561128 agaaaaagcaaacacaattcaaccccccaccc---cttcttgtgtttttctcaccttcatatt 33561187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 603
Target Start/End: Original strand, 27392222 - 27392272
Alignment:
Q  550 gaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    |||||||||||||||||||||   | ||||||||||||||||||||||||||||    
T  27392222 gaaaacacaattcaacccccc---cccccttcttgtgtttttctcaccttcata 27392272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 29290905 - 29291039
Alignment:
Q  93 ttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagta-tcagaagtcatctgaac-tta 190  Q
    |||||||||||||||| ||||| |||| ||||||   |||||||||||||| ||| | | ||||| |||||||||||| | |||| |||| ||||| |||    
T  29290905 ttactctgtcaaattacatagcgcacaaacacttactgaaattcttacaaactttca-atcttaacatttcttaagtatttagaaatcatttgaacttta 29291003  T
Q  191 aacttcgtacacctgtgattgtatatcaagtgtaaa 226  Q
    | |||| |||| || ||||||||| |||| ||||||    
T  29291004 atcttcctacagctctgattgtatgtcaactgtaaa 29291039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 23586728 - 23586788
Alignment:
Q  319 aattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactc 380  Q
    ||||||||||| ||||||||| ||||||||||  ||||||||||||||| |||| |||||||    
T  23586728 aattgtaatctagtgtgattatagtgaaaatc-cttggaagtgcaaggggactgaactactc 23586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 26110698 - 26110649
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  26110698 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 26110649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 26120372 - 26120324
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  26120372 agaaaaagaaaacacaattcaacccccca-ccccccttcttgtgtttttc 26120324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 19428390 - 19428333
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccctt-cttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || ||||| |||||||||||||||||||||    
T  19428390 agaaaaagaaaacacaattcaacccccc--ccccccttccttgtgtttttctcaccttca 19428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 348
Target Start/End: Original strand, 20049562 - 20049831
Alignment:
Q  76 tcattttacatgtactcttactctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatca-g 174  Q
    |||||||||| || | ||||| || |||| ||||||||| |||| |||||| |||||||||||||||  ||| | | | || |||||||||||||| | |    
T  20049562 tcattttacaagtgcccttaccctatcaagttatatagcgcacaaacacttagagaaattcttacaagctttca-atcatagaatttcttaagtattatg 20049660  T
Q  175 aagtcatctgaacttaaac-ttcgtacacctgtgattgtatatcaagtgtaaa-atgcaatatcttttatttgattaaacttacattgtagaagtctctt 272  Q
    ||||||  || |||| | | ||| ||||||| |||||||||   ||||||||| ||  ||| |  |||||||| |||||||   ||||||||||||||||    
T  20049661 aagtcacttgcactttagctttcttacacctctgattgtat---aagtgtaaacat--aatcttatttatttg-ttaaactctgattgtagaagtctctt 20049754  T
Q  273 ttttgtgtgattgagcagatg-aagtcttttactt-tgtgtttgagtaaattgtaatcttgtgtgattacagtgaaaa 348  Q
      ||||| | |||| || ||| |||||| |||||| |||||||||| |||||||||| ||||| ||||| ||||||||    
T  20049755 acttgtgcgtttgaaca-atgtaagtctcttacttgtgtgtttgagcaaattgtaatattgtgagattatagtgaaaa 20049831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 20049938 - 20049982
Alignment:
Q  488 agaactttgtttctcatcagactctaaactatttttatacactta 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||    
T  20049938 agaactttgtttctaatcagactttaaactgtttttatacactta 20049982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 30213833 - 30213769
Alignment:
Q  318 aaattgtaatcttgtgtgattacagtgaaaa-tcggttggaagtgcaagggaactggactactct 381  Q
    |||||||| ||||| ||||||| |||||||| ||  ||||||||||||||| |||||||||||||    
T  30213833 aaattgtagtcttgcgtgattatagtgaaaaatcccttggaagtgcaaggggactggactactct 30213769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 34275468 - 34275523
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||||||   || |||||||||||||||| |||||||||    
T  34275468 agaaaaagaaaacacaattcaaccccc---ccccccttcttgtgtttttttcaccttca 34275523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 14547767 - 14547676
Alignment:
Q  319 aattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataatttg 410  Q
    ||||||||||||||||||||| ||| ||||||  ||| ||||| ||| |  || |||||||||   ||| ||||||||| ||||||||||||    
T  14547767 aattgtaatcttgtgtgattatagtaaaaatctcttgaaagtgtaagagggcttgactactctcaatttgtgagaggaaccaatataatttg 14547676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 21540163 - 21540104
Alignment:
Q  543 agaaaaggaaaacacaattcaacc-ccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||| ||||  || ||| ||||||||||||||||||||||    
T  21540163 agaaaaagaaaacacaattcaacccccccccccccccctcttgtgtttttctcaccttca 21540104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 23433615 - 23433673
Alignment:
Q  321 ttgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactc 380  Q
    |||||||| ||||| |||| ||||||| ||  ||||||||||||||||||||||||||||    
T  23433615 ttgtaatcatgtgttattatagtgaaa-tcccttggaagtgcaagggaactggactactc 23433673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 601
Target Start/End: Complemental strand, 23792691 - 23792640
Alignment:
Q  551 aaaacacaattcaaccccccagccgccc-ttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  23792691 aaaacacaattcaacccccccccccccccttcttgtgtttttctcaccttca 23792640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 30214014 - 30213939
Alignment:
Q  153 cttaaaatttcttaagta-tcagaagtcatctgaacttaaactt-cgtacacctgtgattgtatatcaagtgtaaa 226  Q
    |||||||||||||||||| ||| ||||||| ||||||| || || | ||||||| | |||||||||||||||||||    
T  30214014 cttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaa 30213939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 13697494 - 13697541
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  13697494 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 13697541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 23580697 - 23580744
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  23580697 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 23580744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 33929241 - 33929310
Alignment:
Q  308 gtgtttgagtaaattgtaatcttgtgtgattacagtg-aaaatcggttggaagtgcaagggaactggacta 377  Q
    |||||||| |||||| |||||||||||||||| |||| ||||||  ||||||||||||| | |||||||||    
T  33929241 gtgtttga-taaattataatcttgtgtgattatagtgaaaaatcatttggaagtgcaagaggactggacta 33929310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 601
Target Start/End: Original strand, 20256488 - 20256529
Alignment:
Q  560 ttcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  20256488 ttcaaccccccccccccccttcttgtgtttttctcaccttca 20256529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 29378807 - 29378756
Alignment:
Q  545 aaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||| |||||||||||||||||||||     ||| ||||||||||||||||||||||    
T  29378807 aaaaagaaaacacaattcaacccccc-----cccctcttgtgtttttctcaccttca 29378756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 12870441 - 12870526
Alignment:
Q  95 actctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcat 181  Q
    |||||||||||||||||||| ||||  |||||||| ||||||  ||||| ||| | | ||||||||||||||||| |||||||||||    
T  12870441 actctgtcaaattatatagcgcacaagcacttggaaaaattcaaacaaactttca-atcttaaaatttcttaagtgtcagaagtcat 12870526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 24717723 - 24717779
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  ||  |||||||||||||||||||||||||    
T  24717723 agaaaaagaaaacacaattcaacccccctccc--ccttcttgtgtttttctcaccttca 24717779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 1902136 - 1902083
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  1902136 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcaccttca 1902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 7811250 - 7811192
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||| | |||||||    
T  7811250 agaaaaagaaaacacaattcaaccccccgcccccccttcttgtgtttttataaccttca 7811192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 14070942 - 14071000
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||| ||| ||||  || ||||||||||||||||||||||||||    
T  14070942 agaaaaagaaaacacaattaaacaccccccccccccttcttgtgtttttctcaccttca 14071000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 26043616 - 26043559
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || || |||||||||||||||||||||||    
T  26043616 agaaaaagaaaacacaattcaacccccc-ccccccattcttgtgtttttctcaccttca 26043559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 8862888 - 8862969
Alignment:
Q  95 actctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaa 176  Q
    ||||| |||||||||||||| |||| |||||  || ||||||||||||| ||| | | |||| |||||||||||| ||||||    
T  8862888 actctatcaaattatatagcgcacaaacactcagaaaaattcttacaaactttcacatcttagaatttcttaagtgtcagaa 8862969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 27383839 - 27383785
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  27383839 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 27383785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 27474223 - 27474169
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  27474223 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 27474169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 27503721 - 27503667
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||    
T  27503721 agaaaaagaaaacacaattcaaccccccc----cccttcttgtgtttttctcaccttca 27503667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 25678815 - 25678760
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||| ||||||||   | ||||||||||||||||||||||||||    
T  25678815 agaaaaagaaaacacaattgaacccccc---cccccttcttgtgtttttctcaccttca 25678760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 9934404 - 9934463
Alignment:
Q  543 agaaaaggaaaacacaattcaa-ccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||| ||||||  || ||| ||||||||||||||||||||||    
T  9934404 agaaaaagaaaacacaattcaacccccccccccccccctcttgtgtttttctcaccttca 9934463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 17046989 - 17046930
Alignment:
Q  543 agaaaaggaaaacacaattcaacc-ccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||| ||||  || |||||||||||||||||||| |||||    
T  17046989 agaaaaagaaaacacaattcaacccccccccccccccttcttgtgtttttctcagcttca 17046930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 17304178 - 17304222
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||    
T  17304178 aacacaattcaacccccca----cccttcttgtgtttttctcaccttca 17304222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 17742496 - 17742550
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatat 604  Q
    |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  17742496 agaaaaagaaaacacaattcaacccccc-------cttcttgtgtttttctcaccttcatat 17742550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 25787106 - 25787047
Alignment:
Q  543 agaaaaggaaaacacaattcaacc-ccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||| ||||  || ||| ||||||||||||||||||||||    
T  25787106 agaaaaagaaaacacaattcaacccccccccccccccctcttgtgtttttctcaccttca 25787047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 16929853 - 16929806
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  16929853 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 16929806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Original strand, 16124351 - 16124380
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatt 605  Q
    ||||||||||||||||||||||||||||||    
T  16124351 cccttcttgtgtttttctcaccttcatatt 16124380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 16959024 - 16958975
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || || ||||||||||||||    
T  16959024 agaaaaagaaaacacaattcaaccccccccccccctttcttgtgtttttc 16958975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 26024861 - 26024813
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  26024861 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 26024813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 26035435 - 26035387
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  26035435 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 26035387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 601
Target Start/End: Complemental strand, 19469866 - 19469819
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||  || ||||||||||| ||||||||||||||    
T  19469866 aacacaattcaaccccccctcctcccttcttgtg-ttttctcaccttca 19469819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 23393302 - 23393359
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||    
T  23393302 agaaaaggaaaacacaattcaacccccc-ccccccctccttgtgtttttctcaccttca 23393359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 19642384 - 19642459
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaat-atcttttatttgattaaacttacattgtagaagtctcttt 273  Q
    ||||||| |||||||| ||||||||||||||  ||| ||||||||||||||| || ||| |||||||||||||||||    
T  19642384 tacacctttgattgtaaatcaagtgtaaaatcaaataatcttttatttgatt-aagttagattgtagaagtctcttt 19642459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 22747887 - 22747794
Alignment:
Q  312 ttgagtaaattgtaatcttgtgtgattacagtgaaaatcggttggaagtgcaagggaactggactactcttggtttatgagaggaaacaatataa 406  Q
    ||||| || |||||||| | ||| |||| ||||||| ||  ||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||    
T  22747887 ttgagaaatttgtaatcctatgttattatagtgaaa-tcccttggaagtgcaaggggactggactactcttgtgttatgggaggaaccaatataa 22747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 22686909 - 22686958
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  22686909 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 22686958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 36097982 - 36098042
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccc--ttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||  |||||||||||||||||||||||    
T  36097982 agaaaaagaaaacacaattcaaccccccccccccccccttcttgtgtttttctcaccttca 36098042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 40391256 - 40391305
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  40391256 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 40391305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 20253497 - 20253580
Alignment:
Q  98 ctgtcaaattatatagctcacagacacttggagaaattcttacaaaatttaataacttaaaatttcttaagtatcagaagtcat 181  Q
    ||||||||||||||||| || | |||||| || ||||| ||| ||| ||| ||| |||| |||||||||||| ||| |||||||    
T  20253497 ctgtcaaattatatagcgcataaacacttagaaaaattattataaactttcatatcttagaatttcttaagtgtcaaaagtcat 20253580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 20798598 - 20798659
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccc---ttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||   |||||||||||||||||||||||    
T  20798598 agaaaaagaaaacacaattcaacccccccccccccccccttcttgtgtttttctcaccttca 20798659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 13403555 - 13403502
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||     ||||||||||||||||||||| ||||    
T  13403555 agaaaaagaaaacacaattcaacccccc-----cccttcttgtgtttttctcacgttca 13403502  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 23363010 - 23363057
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  23363010 agaaaaagaaaacacaattcaacccccc--ccccccttcttgtgtttttc 23363057  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 6037747 - 6037694
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaata-tcttttatttgattaa 250  Q
    ||||||| ||||| |||||||||||||||||  |||| ||||||||||||||||    
T  6037747 tacacctttgattctatatcaagtgtaaaatcaaatagtcttttatttgattaa 6037694  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 20689839 - 20689786
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaa-tatcttttatttgattaa 250  Q
    ||||||| |||||||||||||||||||||||  ||  |||||||||||||||||    
T  20689839 tacacctatgattgtatatcaagtgtaaaatcaaacaatcttttatttgattaa 20689786  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 24808815 - 24808863
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  24808815 agaaaaagaaaacacaattcaacccccc-cccccccttcttgtgtttttc 24808863  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 34063522 - 34063582
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgccct--tcttgtgtttttctcaccttca 601  Q
    |||||| |||||||||||||||||||||  || |||   ||||||||||||||||||||||    
T  34063522 agaaaaagaaaacacaattcaaccccccccccccccccctcttgtgtttttctcaccttca 34063582  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 39365382 - 39365431
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || || ||||||||||||||    
T  39365382 agaaaaagaaaacacaattcaaccccccccccccctttcttgtgtttttc 39365431  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 9336854 - 9336908
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||| ||||||||||||||||||||   || |||||||||||||||| |||||||||    
T  9336854 agaaaaagaaaacacaattcaaccccc---ccccccttcttgtgttttt-tcaccttca 9336908  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 17241341 - 17241254
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaata-tcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattg 285  Q
    ||||||| |||||| |||| ||||||||||  ||| | ||||||||| ||||||  ||| ||||||||||||| ||| |||||||||||    
T  17241341 tacacctttgattgaatataaagtgtaaaaaccaacaatcttttattcgattaag-ttagattgtagaagtctatttcttgtgtgattg 17241254  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 19990250 - 19990202
Alignment:
Q  121 acacttggagaaattcttacaaaatttaataacttaaaatttcttaagt 169  Q
    |||||| || ||||||||||||| ||| ||| |||||||||||||||||    
T  19990250 acacttagaaaaattcttacaaattttcatatcttaaaatttcttaagt 19990202  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Original strand, 22000944 - 22000972
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatat 604  Q
    |||||||||||||||||||||||||||||    
T  22000944 cccttcttgtgtttttctcaccttcatat 22000972  T

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Target: scaffold0655 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 4322 - 4265
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcat 602  Q
    |||||| ||||||||||||||||||| |  || |||||||||||||||||||||||||||    
T  4322 agaaaaagaaaacacaattcaacccctc--ccccccttcttgtgtttttctcaccttcat 4265  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 66278 - 66325
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  66278 aacacaattcaacccccc-gccccccttcttgtgtttttctcaccttca 66325  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 9842 - 9913
Alignment:
Q  307 tgtgtttgagtaaattgtaatcttgtgtgattacagtg-aaaatcggttggaagtgcaagggaactggacta 377  Q
    |||||||||| ||| |||||| ||||||||||| |||| ||||||  ||||||||||||||| |||||||||    
T  9842 tgtgtttgagcaaactgtaatattgtgtgattatagtgaaaaatccattggaagtgcaaggggactggacta 9913  T

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Target: scaffold0149 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 602
Target Start/End: Original strand, 38792 - 38850
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtg-tttttctcaccttcat 602  Q
    ||||||||||||||||||||||||||||  || || |||||||| ||||||||||||||||    
T  38792 agaaaaggaaaacacaattcaacccccc--cccccgttcttgtgttttttctcaccttcat 38850  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 7661 - 7710
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttc 592  Q
    |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  7661 agaaaaagaaaacacaattcaaccccccccccccccttcttgtgtttttc 7710  T

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Target: scaffold0530 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 2888 - 2936
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  2888 aacacaattcaaccccccccccccccctcttgtgtttttctcaccttca 2936  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 135810 - 135719
Alignment:
Q  198 tacacctgtgattgtatatcaagtgtaaaatgcaat-atcttttatttgattaaacttacattgtagaagtctcttttttgtgtgattgagca 289  Q
    ||||||| ||||||||||||||||||||||   ||| ||||||||||||||| || ||| |||||| |||||||| | ||||| | |||||||    
T  135810 tacacctctgattgtatatcaagtgtaaaactaaataatcttttatttgatt-aagttaaattgtaaaagtctctctcttgtgggtttgagca 135719  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 604
Target Start/End: Complemental strand, 34861 - 34807
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatat 604  Q
    |||||| |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  34861 agaaaaagaaaacacaattcaacccccc-------cttcttgtgtttttctcaccttcatat 34807  T

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Target: scaffold0273 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 606
Target Start/End: Complemental strand, 4912 - 4882
Alignment:
Q  576 cccttcttgtgtttttctcaccttcatatta 606  Q
    |||||||||||||||||||||||||||||||    
T  4912 cccttcttgtgtttttctcaccttcatatta 4882  T

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Target: scaffold1321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1321
Description:

Target: scaffold1321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 1815 - 1875
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatat 604  Q
    |||||| |||||||||||||||||||||  || |||  ||||||||||||||| ||||||||    
T  1815 agaaaaagaaaacacaattcaacccccc-ccccccccgcttgtgtttttctcagcttcatat 1875  T

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Target: scaffold1263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1263
Description:

Target: scaffold1263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 2008 - 2068
Alignment:
Q  543 agaaaaggaaaacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcatat 604  Q
    |||||| |||||||||||||||||||||  || |||  ||||||||||||||| ||||||||    
T  2008 agaaaaagaaaacacaattcaacccccc-ccccccccgcttgtgtttttctcagcttcatat 2068  T

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Target: scaffold0297 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 601
Target Start/End: Complemental strand, 9183 - 9146
Alignment:
Q  564 accccccagccgcccttcttgtgtttttctcaccttca 601  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  9183 acccccccgccccccttcttgtgtttttctcaccttca 9146  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 29592 - 29651
Alignment:
Q  543 agaaaaggaaaacacaattcaa---ccccccagccgcccttcttgtgtttttctcacctt 599  Q
    |||||| |||||||||||||||   ||||||  || ||||||||||||||||||||||||    
T  29592 agaaaaagaaaacacaattcaacccccccccccccccccttcttgtgtttttctcacctt 29651  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 603
Target Start/End: Original strand, 2942 - 2989
Alignment:
Q  553 aacacaattcaaccccccagccgcccttcttgtgtttttctcaccttcata 603  Q
    ||||||||||||||||||   | ||| ||||||||||||||||||||||||    
T  2942 aacacaattcaacccccc---cccccctcttgtgtttttctcaccttcata 2989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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