View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_64 (Length: 266)
Name: NF1739_low_64
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_64 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 41685 - 41447
Alignment:
| Q |
21 |
caagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgagggtgttcattccttgaagcaggaaaaca |
120 |
Q |
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| T |
41685 |
caagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgatggtgttcattccttgaagcaggaaaaca |
41586 |
T |
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| Q |
121 |
acaaaggctatgaaaggtgactttttatgatctaaatgaaatactgcatgtttgctgctatattaattttgaagaattaaagtgctgctatattaatttt |
220 |
Q |
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| T |
41585 |
acaaaggctatgaaaggtgactttttatgatctatatgaaatactgcatgtttgctgctatattaattttgaagaattaaagtgctgctatattaatttt |
41486 |
T |
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| Q |
221 |
gactaagtcaaatcaaccaaagtgttgatatagtattat |
259 |
Q |
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| T |
41485 |
gactaagtcaaatcaaccaaagtgttgatatagtattat |
41447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 35015 - 34777
Alignment:
| Q |
21 |
caagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgagggtgttcattccttgaagcaggaaaaca |
120 |
Q |
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| T |
35015 |
caagcttgagtgtttcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgggggtgttcattccttgaagcatgaaaaca |
34916 |
T |
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| Q |
121 |
acaaaggctatgaaaggtgactttttatgatctaaatgaaatactgcatgtttgctgctatattaattttgaagaattaaagtgctgctatattaatttt |
220 |
Q |
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| T |
34915 |
acaaaggctatgaaaggtgactttttatgatctaaatgaaatactgcatgtttgctgctatattagttttgaagaattaaagtgctgctatattaatttt |
34816 |
T |
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| Q |
221 |
gactaagtcaaatcaaccaaagtgttgatatagtattat |
259 |
Q |
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| T |
34815 |
gactaagtcaaatcaaccaaagtgctgctatagtattat |
34777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 27445673 - 27445911
Alignment:
| Q |
21 |
caagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgagggtgttcattccttgaagcaggaaaaca |
120 |
Q |
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| T |
27445673 |
caagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgatggtgttcattccttgaagcaggaaaaca |
27445772 |
T |
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| Q |
121 |
acaaaggctatgaaaggtgactttttatgatctaaatgaaatactgcatgtttgctgctatattaattttgaagaattaaagtgctgctatattaatttt |
220 |
Q |
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| T |
27445773 |
acaaaggctatgaaaggtgactttttatgatctatatgaaatactgcatgtttgctgctatattaattttgaagaattaaagtgctgctatattaatttt |
27445872 |
T |
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| Q |
221 |
gactaagtcaaatcaaccaaagtgttgatatagtattat |
259 |
Q |
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| T |
27445873 |
gactaagtcaaatcaaccaaagtgttgatatagtattat |
27445911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 14455648 - 14455584
Alignment:
| Q |
195 |
aattaaagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattat |
259 |
Q |
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| T |
14455648 |
aattaaagtgttgctatattaattttgattaagtcaaatcaaccaaagtgctgctatagtattat |
14455584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 47247045 - 47247117
Alignment:
| Q |
92 |
gggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact |
165 |
Q |
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| T |
47247045 |
gggtgttcattcattgaagcaggaaaacaacaaa-aatataaaaggtgactttctatgatgtagatgaaatact |
47247117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 15580731 - 15580651
Alignment:
| Q |
74 |
tcttgatatattaactgagggtgttcattccttgaagcaggaaaa-caacaaaggctatgaaaggtgactttttatgatct |
153 |
Q |
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| T |
15580731 |
tcttgctagattaactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgatct |
15580651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 42312374 - 42312296
Alignment:
| Q |
86 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact |
165 |
Q |
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| T |
42312374 |
aactgggggtgttcattcattgaagcaggaaaagaacaaa-aatataaaaggtgactttctctgatgtagatgaaatact |
42312296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 8333836 - 8333897
Alignment:
| Q |
108 |
aagcaggaaaa-caacaaaggctatgaaaggtgactttttatgatctaaatgaaatactgca |
168 |
Q |
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| T |
8333836 |
aagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctagatgaaatactgca |
8333897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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