View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_66 (Length: 266)
Name: NF1739_low_66
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 21502337 - 21502089
Alignment:
| Q |
1 |
agtggcgttgttctctctcatagattctctgtttctgtaaaactaacaatggcggcgctgcttggtcacattctgaagacccaaaagaattcctcgcttc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21502337 |
agtggctttgttctctctcatagattctctgtttctgtaaa-ctaacaatggcggcgctgcttggtcacattctgaagacccaaaagaattcctcgcttc |
21502239 |
T |
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| Q |
101 |
ttcgcaacatcacttcctcttcgttgcatcaaacacctttcattctcccacctttatctcaaggtatttcaaatatcaaatcataacgatgatgataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
21502238 |
ttcgcaacatcacttcctcttcgttgcatcaaacacctttcattctcccacctttatctcaaggtatttcaaatttcaaatcataacgatgttgataatc |
21502139 |
T |
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| Q |
201 |
attattgataagttttcccgaaaattgcagaattttctagggtatcaatg |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21502138 |
attattgaaaagttttcccgaaaattgcagaattttctagggtatcaatg |
21502089 |
T |
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