View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_71 (Length: 258)
Name: NF1739_low_71
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 31016227 - 31016003
Alignment:
| Q |
13 |
aaaataaagtatgagaagttcttgactctttttgatacaatcttcaacttattggatgaaaatgtgtctagcataaaatggtgggactcattcaacaaaa |
112 |
Q |
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| T |
31016227 |
aaaataaagtatgagaagttcttgactctttttgatacaatcttcaacttattggatgaaaatgtgtctagtataaaatggtgggactcattcaacaaaa |
31016128 |
T |
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| Q |
113 |
ttagcatttctctgtcctgtaatatgtgtcactatattgagattagatagatataaatgtttgatgaaaatatttttgaagcataaatcttaacatgtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31016127 |
ttagcatttctctgtcctgtaatatgtgtcactatattgaaattagatagatataaatgtttgatgaaaatatttttgaagcataaatcttaacatgtgt |
31016028 |
T |
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| Q |
213 |
cgaactaaaaattcagattatactc |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
31016027 |
cgaactaaaaattcagattatactc |
31016003 |
T |
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