View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_72 (Length: 256)

Name: NF1739_low_72
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_72
NF1739_low_72
[»] chr7 (10 HSPs)
chr7 (1-234)||(25635912-25636144)
chr7 (1-229)||(47363712-47363940)
chr7 (1-159)||(39653465-39653623)
chr7 (55-236)||(10493472-10493651)
chr7 (1-159)||(33049119-33049287)
chr7 (70-135)||(45435419-45435484)
chr7 (1-62)||(10493378-10493439)
chr7 (1-67)||(7493072-7493138)
chr7 (1-159)||(31742881-31743050)
chr7 (1-81)||(45435503-45435585)
[»] chr4 (8 HSPs)
chr4 (1-238)||(55606255-55606491)
chr4 (1-238)||(28146904-28147143)
chr4 (1-238)||(38411877-38412114)
chr4 (1-238)||(25967922-25968160)
chr4 (1-228)||(13198089-13198314)
chr4 (97-159)||(11440592-11440654)
chr4 (27-132)||(46308386-46308491)
chr4 (1-62)||(11440664-11440728)
[»] chr3 (6 HSPs)
chr3 (1-238)||(11783415-11783651)
chr3 (2-238)||(7299032-7299267)
chr3 (104-151)||(21926546-21926593)
chr3 (97-159)||(19596543-19596605)
chr3 (1-37)||(53527190-53527226)
chr3 (4-95)||(46475656-46475750)
[»] chr2 (8 HSPs)
chr2 (1-229)||(17988996-17989225)
chr2 (1-227)||(37794660-37794886)
chr2 (1-92)||(5430218-5430309)
chr2 (110-224)||(19263710-19263824)
chr2 (68-157)||(35016457-35016545)
chr2 (1-73)||(19263821-19263893)
chr2 (104-159)||(5428644-5428699)
chr2 (1-57)||(35016332-35016388)
[»] chr1 (8 HSPs)
chr1 (3-238)||(32617581-32617813)
chr1 (1-238)||(34664704-34664939)
chr1 (1-229)||(9457550-9457775)
chr1 (1-229)||(9461647-9461872)
chr1 (1-136)||(12990541-12990675)
chr1 (4-238)||(14081723-14081949)
chr1 (84-159)||(24699887-24699962)
chr1 (130-243)||(12990256-12990370)
[»] chr8 (9 HSPs)
chr8 (1-206)||(23489978-23490181)
chr8 (26-153)||(7154302-7154429)
chr8 (1-71)||(13402173-13402243)
chr8 (1-62)||(13396884-13396945)
chr8 (105-159)||(14867365-14867419)
chr8 (188-241)||(45191737-45191790)
chr8 (1-35)||(7154265-7154299)
chr8 (1-30)||(14370815-14370844)
chr8 (119-159)||(45191664-45191704)
[»] chr6 (8 HSPs)
chr6 (1-159)||(9177592-9177753)
chr6 (70-224)||(10117103-10117259)
chr6 (81-233)||(32296294-32296445)
chr6 (1-87)||(26660625-26660711)
chr6 (1-87)||(26766596-26766682)
chr6 (171-238)||(8169126-8169194)
chr6 (105-159)||(22509084-22509138)
chr6 (104-148)||(8546250-8546294)
[»] chr5 (9 HSPs)
chr5 (1-197)||(22927073-22927269)
chr5 (1-159)||(39426099-39426256)
chr5 (1-159)||(41283495-41283651)
chr5 (1-159)||(13424648-13424802)
chr5 (1-159)||(36491498-36491647)
chr5 (49-199)||(16341474-16341621)
chr5 (50-238)||(19967429-19967612)
chr5 (104-159)||(20141660-20141715)
chr5 (1-74)||(20141546-20141620)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25635912 - 25636144
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||    
T  25635912 tgaattaatcacaacattgcacacctcttaaataatgataataatgtaaataacttaaactaaagatagatttggagttctaaactagacaaggagataa 25636011  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    || ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||       || ||||||| | ||| ||| |||||||||| ||    
T  25636012 cattatgtaatttatgattaaatatgtactaaagatatgattttcatctatttcaattg-aaaaaatacccggattatgtgtttattgtcatgaacgaca 25636110  T
Q  201 ttttttgcgaccgtaacggtgtttcgtcgcggct 234  Q
    |||||| || ||||||||||||||||| ||||||    
T  25636111 ttttttacggccgtaacggtgtttcgttgcggct 25636144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 47363712 - 47363940
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||| |||||||||||| ||||||||||| ||| |||  |||||||||||||||||||| ||||||| ||||||||||||||||| || ||||    
T  47363712 tgaattaatcaaaacattgcacaagtcttaaataatgataataacttaaataacttaaactagagaaagatttgaagttctaaactagataaggagataa 47363811  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatct-atctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggc 199  Q
    |  |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||       |||||||||||||||||||| ||||||||||||    
T  47363812 c-ttatgtaatctatgatcaaatatgtactaaaaatatgcttttcatctaatctcaattg-aaaaaatatccggattctatgtctattgtcatgaacggc 47363909  T
Q  200 -attttttgcgaccgtaacggtgtttcgtcg 229  Q
     ||||||||||  |||| |||||||||||||    
T  47363910 aattttttgcggtcgtatcggtgtttcgtcg 47363940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 39653465 - 39653623
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||| ||| ||||||||||||||||| |||  || ||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||    
T  39653465 tgaattaatcacaatattccacaactcttaaataatgatagcaacgtaaataacttaaactagatataaagttggagttctaaactagataaagagataa 39653564  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  39653565 cattatgtaatttatgatcaaatatgtactaaaaatatgatgttcatctatttcaattg 39653623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 10493472 - 10493651
Alignment:
Q  55 ttaaactagagatagatttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctc 154  Q
    ||||||||||||| ||||||||| ||||||||| |||| || |||||| ||||||||||||||||||||||| | ||||||||||| ||||||| |||||    
T  10493472 ttaaactagagatggatttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatga-tttcatccatctc 10493570  T
Q  155 aattgnnnnnnntatccggattctatgtctatcgtcatgaacggcattttttgcgaccgtaacggtgtttcgtcgcggctgt 236  Q
    |||||       ||| |  ||| | ||||||| || ||||| |||||||| |||| || ||||||||||| |||||||||||    
T  10493571 aattg-aaaaaatatacatattatgtgtctattgttatgaatggcattttatgcggccttaacggtgttttgtcgcggctgt 10493651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 33049287 - 33049119
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataat-aatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaa------ 93  Q
    ||||||||||| ||||||||||||||||||||||||  ||| |||  |||||||||| || |||||||||||||| |||| |||||||||||||          
T  33049287 tgaattaatcaaaacattgcacaactcttaaataatgtataataacttaaataacttgaaatagagatagatttgaagtt-taaactagataaagagcat 33049189  T
Q  94 ----gaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
        || |||||  | ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  33049188 aaaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattg 33049119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 45435484 - 45435419
Alignment:
Q  70 atttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaa 135  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaa 45435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10493378 - 10493439
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaacta 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  10493378 tgaattaatcacaacattgcacaactcttaaataatgatagtaacgtaaataacttaaacta 10493439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7493072 - 7493138
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagat 67  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||||||||||||    
T  7493072 tgaattaatcacaacattacacaactcttaaataatgatagtaacgtaaataatttaaactagagat 7493138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 31743050 - 31742881
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataata-atactaatgtaaataacttaaactagagatagatttggagttctaaactagataaag----- 94  Q
    |||||||||||||||||||||||  |||||||||||  ||| |||  ||||||||||||| |||||||||||||| |||| | || |||||||||         
T  31743050 tgaattaatcacaacattgcacagttcttaaataatgtataataacttaaataacttaaattagagatagatttgaagttttgaagtagataaagagcat 31742951  T
Q  95 -----aaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
         | |||||  | |||||| |||| ||||||||||| ||||||| ||||||||||| ||||||||||    
T  31742950 aaagaatataaccttgtgtaatatatgttcaaatatgtattaaaaatgtgattttcatccatctcaattg 31742881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 45435585 - 45435503
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaa--ataacttaaactagagatagatttggagttct 81  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||| ||  |||||||||| | |||||| ||||| ||||||    
T  45435585 tgaattaataacaatattgcacaactcttaaataataatagtaatggaaatataacttaaattggagataaatttgaagttct 45435503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 55606255 - 55606491
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||||||||||||| |||| |||||||    
T  55606255 tgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataa 55606354  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||       |||  |||||| |||||||| ||||||||| | |    
T  55606355 c-ttatgtaatttatgatcaaatatgtactaaaaatataattttcatctatatcaattg-aaaaaatatttggattccatgtctattgtcatgaacagaa 55606452  T
Q  201 -ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
     ||||||||| ||||||||||||||| ||||||||||||    
T  55606453 tttttttgcggccgtaacggtgtttcatcgcggctgtaa 55606491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28147143 - 28146904
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||| || ||||||||| ||||||| ||||||| || ||||    
T  28147143 tgaattaatcacaacattgcacaactcttaaataatattatcaacttaaataacttaaactagggaaagatttggaattctaaattagataaggagataa 28147044  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggc- 199  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||| ||||||||||||     
T  28147043 c-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg-aaaaaatatccagattctatgtctattgtcatgaacggcc 28146946  T
Q  200 ---attttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
        ||||||||| |||||||||||||||||||| |||||||    
T  28146945 ttttttttttgcggccgtaacggtgtttcgtcgcagctgtaa 28146904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38411877 - 38412114
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||| ||||| ||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  38411877 tgaattaatcacaacattgcacaacttttaaacaatgataggaatgtaaataacttaacctagagatagatttggagttctaaactagataaggaaataa 38411976  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    || |||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||       ||| | ||||   ||||||| |||||||||| ||    
T  38411977 cattatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattg-aaaagatattcagatttggtgtctattgtcatgaacgaca 38412075  T
Q  201 tt-ttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    || ||||||| |||||| |||||||||||||||||||||    
T  38412076 ttcttttgcggccgtaatggtgtttcgtcgcggctgtaa 38412114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25968160 - 25967922
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||||||| ||| | |  || ||||||||||||||||| |||| ||  ||||||||||||||||  | ||||    
T  25968160 tgaattaatcacaacattgcacaactcttaaataatgatagtcacttacataacttaaactagagaaagatctgacgttctaaactagataagaagataa 25968061  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg-nnnnnnntatccggattctatgtctatcgtcatgaacggc 199  Q
    |  |||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||        |||||| ||||||||||| | |||||||| |||    
T  25968060 c-ttatgtaatttattatcaaatatgtaccaaaaatatgattatcatctatatcaattgaaaaaaaatatccgaattctatgtctgttgtcatgaatggc 25967962  T
Q  200 -attttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
     |||||||||  |||||||||||||||||||||| |||||    
T  25967961 aattttttgcagccgtaacggtgtttcgtcgcggttgtaa 25967922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13198089 - 13198314
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||| ||| ||  |||  |  ||||||||||||||| | ||||||||||||||||| ||||||| || ||||    
T  13198089 tgaattaatcacaacattgcacaactcttaaacaatgatcgtaactttgataacttaaactagacaaagatttggagttctaaattagataaggagataa 13198188  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||       |||||||||||||||||| | || |  |||||||    
T  13198189 ct-tatgtaatttatgatcaaatatgcactaagaatatgattttcatgtatctcaattg-aaaaaatatccggattctatgtcttttgttacaaacggca 13198286  T
Q  201 ttttttgcgaccgtaacggtgtttcgtc 228  Q
    ||||||   |||||||  ||||||||||    
T  13198287 tttttttttaccgtaatcgtgtttcgtc 13198314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 11440654 - 11440592
Alignment:
Q  97 ataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11440654 ataacattatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatcttaattg 11440592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 46308386 - 46308491
Alignment:
Q  27 cttaaataataatactaatgtaaataacttaaact-agagatagatttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatat 125  Q
    |||||||||| ||| |||  ||||||||||||| | ||||| |||||| |||||||||||||  ||| || |||||  ||||||||||||||||||||||    
T  46308386 cttaaataatgatagtaacttaaataacttaaattgagagagagatttagagttctaaactaactaaggagataact-tatgtaatttatgatcaaatat 46308484  T
Q  126 gtactaa 132  Q
    |||||||    
T  46308485 gtactaa 46308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11440728 - 11440664
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataata---atactaatgtaaataacttaaacta 62  Q
    |||||||||||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||    
T  11440728 tgaattaatcacaacattgttcaactcttaaataataatgatagtaatgtaaataacttaaacta 11440664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11783415 - 11783651
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||| |||| |||||||||||||||||||||||||| ||| |||  |||| ||||||||| |||||||||||||||||||||||||||| || || | ||    
T  11783415 tgaagtaattacaacattgcacaactcttaaataatgatagtaacataaagaacttaaacaagagatagatttggagttctaaactagacaaggagacaa 11783514  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||| ||||| | |||||| ||||    
T  11783515 cattgtgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaaatatccggagtctatttctattgccatgaaaggca 11783614  T
Q  201 ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
     |||||||| ||||||| |||||||||||| |||||||    
T  11783615 -tttttgcggccgtaacagtgtttcgtcgcagctgtaa 11783651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 7299267 - 7299032
Alignment:
Q  2 gaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataac 101  Q
    ||||||| |||||||||| |||||||||||||||  ||| ||| |||||||||||||||||||||||||||| || ||||||| ||||||| || |||||    
T  7299267 gaattaaccacaacattgtacaactcttaaataacgatagtaacgtaaataacttaaactagagatagattt-gaattctaaagtagataaggagataac 7299169  T
Q  102 actatgtaatttatgatcaaatatgtactaaaaatatgattttcatc-tatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    | ||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||       |||||||||| | | ||||  |||||||||||||    
T  7299168 attatgtaatttatgattaaatatgtacttaaaatatggttttcatcgtatctcaattg-aaaaaatatccggattttgtctctagtgtcatgaacggca 7299070  T
Q  201 ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    ||||||||| |||||| ||| ||||||||| |||||||    
T  7299069 ttttttgcggccgtaaaggtctttcgtcgcagctgtaa 7299032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 21926546 - 21926593
Alignment:
Q  104 tatgtaatttatgatcaaatatgtactaaaaatatgattttcatctat 151  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  21926546 tatgtaatttatgattaaatatgtactgaaaatatgattttcatctat 21926593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 19596543 - 19596605
Alignment:
Q  97 ataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||| ||||||| ||||| |||||| |||||||||||||||||||| ||| | ||||||||    
T  19596543 ataacattatgtaacttatgttcaaatttgtactaaaaatatgatttttatccacctcaattg 19596605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53527226 - 53527190
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataata 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  53527226 tgaattaatcacaacattgcacaacttttaaataata 53527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 46475750 - 46475656
Alignment:
Q  4 attaatcacaacattgcacaactcttaaataat-aatactaatgtaaataa--cttaaactagagatagatttggagttctaaactagataaaga 95  Q
    |||| ||||||||||||| ||||||||||||||  ||  |||| |||||||  |||||| |||| ||||||||| || ||||||||||| |||||    
T  46475750 attattcacaacattgcaaaactcttaaataatgtattataatttaaataactcttaaattagaaatagatttgaagctctaaactagagaaaga 46475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17988996 - 17989225
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||||||||||| | ||||||||||||||||||||||||| || ||||    
T  17988996 tgaattaatcacaatattgcacaactcttaaataatgatagtaacttaaataacttaaactagaaaaagatttggagttctaaactagataaggagataa 17989095  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg-nnnnnnntatccggattctatgtctatcgtcatgaacggc 199  Q
     | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||| ||||||||||||||  |||||||||||    
T  17989096 -attatataatttatgatcaaatatgtactaaaaatatgattttcatcgatctcaattgaaaaaaaaaatccagattctatgtctattatcatgaacggc 17989194  T
Q  200 -attttttgcgaccgtaacggtgtttcgtcg 229  Q
      ||||||||| |||||||||||||||||||    
T  17989195 tgttttttgcggccgtaacggtgtttcgtcg 17989225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37794660 - 37794886
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||  || |||||||| || ||||| ||||||||||||||||||||||||| || ||||    
T  37794660 tgaattaatcacaacattgcacaactcttaaataatgatagtaacttagataacttagaccagagaaagatttggagttctaaactagataaggagataa 37794759  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||| |||||||||||| | |||||||||| ||    
T  37794760 c-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcttctatctcaattg-aaaaaatatccagattctatgtcttttgtcatgaacgaca 37794857  T
Q  201 --ttttttgcgaccgtaacggtgtttcgt 227  Q
      ||||||||  |||||||||||||||||    
T  37794858 ttttttttgcagccgtaacggtgtttcgt 37794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5430309 - 5430218
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataa 92  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||||||||||||||||| ||||| ||||||| |||||||    
T  5430309 tgaattaatcacaatattgcacaactcttaaataatgatagtaacataaataacttaaactagagatagagttggatttctaaagtagataa 5430218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 19263824 - 19263710
Alignment:
Q  110 atttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca-ttttttgc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||  |||||||| ||||| |||||||||| || ||||||||    
T  19263824 atttatgatcaaatatgtattaaaaatatgattttcatctatctcaattg-aaacaatatcttgattctatatctattgtcatgaacgacagttttttgc 19263726  T
Q  209 gaccgtaacggtgttt 224  Q
    | ||||||||||||||    
T  19263725 ggccgtaacggtgttt 19263710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 35016457 - 35016545
Alignment:
Q  68 agatttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaat 157  Q
    ||||||||| ||||||||||||||| || |||||  ||| |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  35016457 agatttggaattctaaactagataaggagataact-tatataatttatgatcaaatatgtatcaaaaatatgattttcatctatctcaat 35016545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19263893 - 19263821
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagattt 73  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||  ||||||||||| |||||||||||||||    
T  19263893 tgaattaatcacaacattgcacaattcttaaataatgatagtaacataaataacttatactagagatagattt 19263821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 5428699 - 5428644
Alignment:
Q  104 tatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5428699 tatgtaatttatgatcaattatgtactaataatatgattttcatctatctcaattg 5428644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35016332 - 35016388
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataactta 57  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||    
T  35016332 tgaattaatcacaacattacacaactcttaaataatgatagtaacttaaataactta 35016388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 32617581 - 32617813
Alignment:
Q  3 aattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataaca 102  Q
    |||||||||||||||||||||||||||||||||  ||| |||  | |||||||||||||||||| |  ||| ||||| |||||||||||| || |||||     
T  32617581 aattaatcacaacattgcacaactcttaaataacgatagtaacttgaataacttaaactagagaaatctttagagtt-taaactagataaggagataact 32617679  T
Q  103 ctatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggcatt 202  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||| ||||||||| |||||    
T  32617680 -tatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg-aaaaaatacccggattctatgtctattgtcatgaactgcatt 32617777  T
Q  203 ttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    | ||  | ||||||||||||||||||||||||||||    
T  32617778 tctttgggccgtaacggtgtttcgtcgcggctgtaa 32617813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34664939 - 34664704
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||| |||||||||||||||| ||||||||| ||| ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||  | ||||    
T  34664939 tgaattaattacaacattgcacaacttttaaataatgatagtaacgtaaataacttaaactatagacagatatggagttctaaactagataagaagataa 34664840  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||       |||||   |||||||||||| |||||||||| ||    
T  34664839 cgttatgtaatttatgatcaaatacgtact-aaaatatgattttcatctatctcaattg-aaacaatatccaatttctatgtctattgtcatgaacgaca 34664742  T
Q  201 ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    | ||||||||| |||||  ||| |||||||||||||||    
T  34664741 tcttttgcgactgtaacaatgtatcgtcgcggctgtaa 34664704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9457775 - 9457550
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||   |||||| ||||||||||| || ||| || ||||    
T  9457775 tgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagttctaaacaaggtaaggagataa 9457679  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  |  |||||||||||||| |||||||  |||||||||||||| ||||||||||||||       |||| ||||||||||||||| |||||||||||||    
T  9457678 c-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggca 9457580  T
Q  201 -ttttttgcgaccgtaacggtgtttcgtcg 229  Q
     ||||||||| | ||||||| |||||||||    
T  9457579 tttttttgcggctgtaacggcgtttcgtcg 9457550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9461872 - 9461647
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||   |||||| ||||||||||| || ||| || ||||    
T  9461872 tgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagttctaaacaaggtaaggagataa 9461776  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  |  |||||||||||||| |||||||  |||||||||||||| ||||||||||||||       |||| ||||||||||||||| |||||||||||||    
T  9461775 c-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggca 9461677  T
Q  201 -ttttttgcgaccgtaacggtgtttcgtcg 229  Q
     ||||||||| | ||||||| |||||||||    
T  9461676 tttttttgcggctgtaacggcgtttcgtcg 9461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 12990675 - 12990541
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||| ||||||| ||||||||||||||||| || ||||    
T  12990675 tgaattagtcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttgaagttctaaactagataaggagataa 12990576  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaat 136  Q
     | ||||||||||||||||||||||||| |||||||    
T  12990575 -attatgtaatttatgatcaaatatgtattaaaaat 12990541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 14081723 - 14081949
Alignment:
Q  4 attaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataacac 103  Q
    |||||||||||||||||| |||| ||||||||| |    ||  |||||||||||||||||||||||||||     |||||| ||||||| || ||||||     
T  14081723 attaatcacaacattgcataacttttaaataatgagc--aacttaaataacttaaactagagatagattt-----tctaaattagataatgagataacat 14081815  T
Q  104 ta-tgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtcta--tcgtcatgaacggca 200  Q
    || |||||||    ||||||||| |||||||||| ||||||||||||||||||||||       | ||| |||||||||||||    || | ||||||||    
T  14081816 taatgtaatt----atcaaatatatactaaaaatttgattttcatctatctcaattgaaaaaaatttccagattctatgtctaatatgtaacgaacggca 14081911  T
Q  201 ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    ||||||||| ||||||||||||||| || || ||||||    
T  14081912 ttttttgcggccgtaacggtgtttcatcacgactgtaa 14081949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 24699887 - 24699962
Alignment:
Q  84 actagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||||||| | |||||| |||||||| ||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  24699887 actagataaaaagataacattatgtaatatattatcaaatatatacgaaaaatataattttcatctatctcaattg 24699962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 12990370 - 12990256
Alignment:
Q  130 taaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggc-attttttgcgaccgtaacggtgtttcgtc 228  Q
    ||||||||||||||||||| ||||||| ||       ||||| |||||||||||||| ||||| |||| | |||||||| | | |||||||| |||||||    
T  12990370 taaaaatatgattttcatcgatctcaactgcaaaaaatatccagattctatgtctattgtcataaacgacaattttttgtggctgtaacggtatttcgtc 12990271  T
Q  229 gcggctgtaatgatg 243  Q
    || ||||||| ||||    
T  12990270 gcagctgtaacgatg 12990256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23489978 - 23490181
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||||||||||| |||||||||||||| | ||| |||  || | ||| ||||||||||| ||||||||||||||||||||||||| || ||||    
T  23489978 tgaattaatcacaacattgtacaactcttaaatactgatagtaacttagacaacataaactagagaaagatttggagttctaaactagataaggagataa 23490077  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca 200  Q
    |  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||| |||||||||| |||||||||||||    
T  23490078 c-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttcatctatctcaattg-aaaaaatatccggatgctatgtctattgtcatgaacggca 23490175  T
Q  201 tttttt 206  Q
    ||||||    
T  23490176 tttttt 23490181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 7154302 - 7154429
Alignment:
Q  26 tcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatat 125  Q
    ||||||||||| ||| ||  ||||||||||||||| | |||||||||| ||||||| ||  |||||| || |||  | |||||||| |||||||||||||    
T  7154302 tcttaaataatgataataccgtaaataacttaaaccatagatagattttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatat 7154401  T
Q  126 gtactaaaaatatgattttcatctatct 153  Q
    ||| ||||||||||||||||||||||||    
T  7154402 gtattaaaaatatgattttcatctatct 7154429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13402243 - 13402173
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagat 71  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||| | ||||||    
T  13402243 tgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaactaaaaatagat 13402173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13396945 - 13396884
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaacta 62  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||    
T  13396945 tgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaacta 13396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 14867365 - 14867419
Alignment:
Q  105 atgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  14867365 atgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattg 14867419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 45191737 - 45191790
Alignment:
Q  188 gtcatgaacggcattttttgcgaccgtaacggtgtttcgtcgcggctgtaatga 241  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||| |||||||||    
T  45191737 gtcatgaacgacatttttggcggccgtaacggtgtttcgtcgcgactgtaatga 45191790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7154265 - 7154299
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  7154265 tgaattaatcacaacattgcacaagtcttaaataa 7154299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 14370844 - 14370815
Alignment:
Q  1 tgaattaatcacaacattgcacaactctta 30  Q
    ||||||||||||||||||||||||||||||    
T  14370844 tgaattaatcacaacattgcacaactctta 14370815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 45191664 - 45191704
Alignment:
Q  119 caaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  45191664 caaatatgtactaaaagtatgattttcacctatctctattg 45191704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9177753 - 9177592
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |   || ||||    
T  9177753 tgaattaatcacaacattgcacaactcttgaataatgatagtaacgtaaataacttaaactaaagatagatttggagttctaaactaggt---gagataa 9177657  T
Q  101 cactatgtaatttatga------tcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    || ||||||||||||||      ||||||||||||||||||||||||||||||| ||||||||||    
T  9177656 cattatgtaatttatgatcaaattcaaatatgtactaaaaatatgattttcatcaatctcaattg 9177592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 10117259 - 10117103
Alignment:
Q  70 atttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgatt-----ttcatctatctcaattgnnnnn 164  Q
    ||||||||||||||||||||||| || || |   |||||||||||||||||||||||||||||||||||||||     |||||||||||||||||         
T  10117259 atttggagttctaaactagataaggagattat--tatgtaatttatgatcaaatatgtactaaaaatatgattttcaattcatctatctcaattg-gaaa 10117163  T
Q  165 nntatccggattctatgtctatcgtcatgaacggcattttttgcgaccgtaacggtgttt 224  Q
      |||||||||||| ||||||| |||||||||| ||||||||||| || |||| ||||||    
T  10117162 aatatccggattctgtgtctattgtcatgaacgacattttttgcggccttaacagtgttt 10117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 32296445 - 32296294
Alignment:
Q  81 taaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctat 180  Q
    ||||||| |||| || ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||| | |||| | |    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg-aaaaaatattcagattttgt 32296347  T
Q  181 gtctatcgtcatgaacggcattttttgcgaccgtaacggtgtttcgtcgcggc 233  Q
    |||||| ||||||||| |||||||||| | |||||||  ||||||||| ||||    
T  32296346 gtctattgtcatgaaccgcattttttgtggccgtaacaatgtttcgtcacggc 32296294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26660625 - 26660711
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaacta 87  Q
    ||||||||||||||||||||||||||||||||| | |||| |||  ||||||| |||||||| ||| ||||||||||||||||||||    
T  26660625 tgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttctaaacta 26660711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26766596 - 26766682
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaacta 87  Q
    ||||||||||||||||||||||||||||||||| | |||| |||  ||||||| |||||||| ||| ||||||||||||||||||||    
T  26766596 tgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttctaaacta 26766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 8169126 - 8169194
Alignment:
Q  171 cggattctatgtctatcgtcatgaacggca-ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    |||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  8169126 cggattctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcggctgtaa 8169194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 22509138 - 22509084
Alignment:
Q  105 atgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||| |||| |||||    
T  22509138 atgtaatttatgttcaaacatgtactaaaaatgtgattttcatccatcttaattg 22509084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 8546294 - 8546250
Alignment:
Q  104 tatgtaatttatgatcaaatatgtactaaaaatatgattttcatc 148  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||||    
T  8546294 tatgtaatttatgttcaaatttgtactagaaatgtgattttcatc 8546250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 22927073 - 22927269
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||| ||||||||||||||| | | |||  |||||||||||||||||||||||||| |  ||||||||||||| || || ||||    
T  22927073 tgaattaatcacaacattgcccaactcttaaataatgaaagtaacataaataacttaaactagagatagattcgaggttctaaactagacaatgagataa 22927172  T
Q  101 cactatgtaatttatgatcaaa--tatgtactaaaaatatgattttcatctatctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacg 197  Q
    || ||||| |||||||||||||  | ||||| |||||||||||||||||||||||||||||       |||||||||| ||||||||| ||||||||||    
T  22927173 ca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttcatctatctcaattg-aaaaaatatccggattttatgtctattgtcatgaacg 22927269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 39426099 - 39426256
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||| ||||||||||||||||| || ||| | ||| |||||||||||||||||| || ||||| ||||||| |||||||||| |||| || || |    
T  39426099 tgaattaattacaacattgcacaactcatacatattgatagtaatgtaaataacttaaa-tatagatatatttgga-ttctaaactatataaggagatga 39426196  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaa-atatgattttcatctatctcaattg 159  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  39426197 cattatgtaatttatgatcaaatatgtactaaaatatatgattttcatctatcttaattg 39426256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41283651 - 41283495
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    |||||||||||||||||||||||||| || |||||  ||| |||  |||||||||||||||||||| ||||||| ||||||||||||||||| || ||||    
T  41283651 tgaattaatcacaacattgcacaacttttgaataaagatagtaacataaataacttaaactagagaaagatttgaagttctaaactagataaggagataa 41283552  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    |  ||| ||||||||||||| || ||||||||||||  |||||||||||||||||||||    
T  41283551 c-ttat-taatttatgatcagatttgtactaaaaatgggattttcatctatctcaattg 41283495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 13424648 - 13424802
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaa-ata 99  Q
    |||||||||||||||||||||||||||||||||||| | |||    ||||||||||||| |||||| |||||| || ||||||| ||||| ||| | |||    
T  13424648 tgaattaatcacaacattgcacaactcttaaataatgaaact----taaataacttaaaatagagaaagatttagaattctaaaatagattaaggagata 13424743  T
Q  100 acactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    ||  || || ||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  13424744 act-tacgtgatttatgatcaaatatgtactaaaaatattattttcatttatttcaattg 13424802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 36491647 - 36491498
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataataatactaatgtaaataacttaaactagagatagatttggagttctaaactagataaagaaataa 100  Q
    ||||||||||| ||||||||| || |||||||| || ||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| | |||  ||    
T  36491647 tgaattaatcataacattgcaaaattcttaaatgatgatagtaaagtaaataacataaactagagatagattttgagttctaaactagatgaggaaccaa 36491548  T
Q  101 cactatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    ||         ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  36491547 ca---------ttatgattaaatatgtactaaaaatatgattttcatctatcttaattg 36491498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 16341474 - 16341621
Alignment:
Q  49 aataacttaaactagagatagatttggagttctaaactagataaagaaataacactatgtaatttat--gatcaaatatgtactaaaaatatgattttca 146  Q
    |||||||||||||||||| | || |||| ||||||||||||||| | | |     ||||||||||||  |||||||||||||||||||||||| ||||||    
T  16341474 aataacttaaactagagaaatatatggaattctaaactagataa-gcact-----tatgtaatttatatgatcaaatatgtactaaaaatatgtttttca 16341567  T
Q  147 tctatctcaattg-nnnnnnntatccggattctatgtctatcgtcatgaacggc 199  Q
    |||||||||||||        |||||||||||||||||||| ||||||||||||    
T  16341568 tctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacggc 16341621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 19967612 - 19967429
Alignment:
Q  50 ataacttaaactagagatagatttggagttctaaactagataaagaaataacactatgtaatttatgatcaaatatgtactaaaaatatgattttcatct 149  Q
    ||||||||||||| ||| |||||||||||||||||||||| || ||   |||  || ||||||||||||     |||||||||||||||||||||||| |    
T  19967612 ataacttaaactaaagaaagatttggagttctaaactagacaaggagtcaact-taggtaatttatgat-----atgtactaaaaatatgattttcatat 19967519  T
Q  150 atctcaattgnnnnnnntatccggattctatgtctatcgtcatgaacggca--ttttttgcgaccgtaacggtgtttcgtcgcggctgtaa 238  Q
    ||||||||||       |||||||||||||||||| | ||| |||||  ||  ||||||||| ||||||| ||||||||||  ||||||||    
T  19967518 atctcaattg-aaaaaatatccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtcatggctgtaa 19967429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 20141660 - 20141715
Alignment:
Q  104 tatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattg 159  Q
    ||||||||||||| |||||| |||| |||| |||||||||||||| |||| |||||    
T  20141660 tatgtaatttatgttcaaatctgtaataaagatatgattttcatccatctaaattg 20141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20141546 - 20141620
Alignment:
Q  1 tgaattaatcacaacattgcacaactcttaaataat-aatactaatgtaaataacttaaactagagatagatttg 74  Q
    ||||||||||||||||  |||| |||||||||||||  ||| |||  |||| |||||||| ||||||||||||||    
T  20141546 tgaattaatcacaacaacgcactactcttaaataatgtataataacttaaacaacttaaattagagatagatttg 20141620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University