View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_73 (Length: 255)
Name: NF1739_low_73
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52190984 - 52190742
Alignment:
| Q |
1 |
tattcgtaggtttttggaagtgaatcctgaagggaaggttccagtggtcaagtttgatggtaaatgggttcctgattcagatgttattgttggaattctt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52190984 |
tatttgtaggtttttggaagtgaatcctgaagggaaggttccagtggtcaagtttgatggtaaatgggttcctgattcagatgttattgttggaattctt |
52190885 |
T |
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| Q |
101 |
gaagacaaataccctgaaccctctcttgtttctcctgctcaattttcctcagtgtatgtatgacttgaccctctatttttatactttcaaagtttatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52190884 |
gaagacaaataccctgaaccctctcttgtttctcctgctcaattttcctcagtgtatgtatgacttgaccctctatttttatactttcaaagtttatttt |
52190785 |
T |
|
| Q |
201 |
cttactatgtttttatgtctttaatttcaaactgtctctgttg |
243 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
52190784 |
cttactatgtttttatttctttaatttcaaactgtcactgttg |
52190742 |
T |
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