View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_77 (Length: 251)
Name: NF1739_low_77
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 36019337 - 36019115
Alignment:
| Q |
19 |
cttgactagaagtatttctgcttctttaggtaacttacagtaactagagagatttctcttagtcataaccaatttagtggtcacattcctcaaagtattg |
118 |
Q |
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| T |
36019337 |
cttgactagaagtatttctgcttctttaggtaacttacggtaactagagagatttctcttagtcataaccaatttagtggtcacattcctcaaagtattg |
36019238 |
T |
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| Q |
119 |
gaaatatttcaaatcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtcttagatgcttcaa |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36019237 |
gaaatatttcaaatcttaaacaacttgatctgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtcttagatgcttcaa |
36019138 |
T |
|
| Q |
219 |
tgtttctcatagtaacctctctg |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
36019137 |
tgtttctcatagtaacctctctg |
36019115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 36010745 - 36010593
Alignment:
| Q |
89 |
aatttagtggtcacattcctcaaagtattggaaatatttcaaatcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctt |
188 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
36010745 |
aatttagtggtcacattccttaaagtattggaaatatttcaaatcttaaacaatttgatttgtcacggagtaatctcggtggataaattgcagtttcctt |
36010646 |
T |
|
| Q |
189 |
tgtctaccgacatagtcttagatgcttcaatgtttctcatagtaacctctctg |
241 |
Q |
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| T |
36010645 |
tgacaacctacatagtcttagttgcttcaatgtttctcataataacgtctctg |
36010593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 36025337 - 36025136
Alignment:
| Q |
29 |
agtatttctgcttctttaggtaacttacagtaact-agagagatttctcttagtcataaccaatttagtggtcacattcctcaaagtattggaaatattt |
127 |
Q |
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|||||| ||| |||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
36025337 |
agtattcctgattctttaggtaacttaagggaacttagagagatttctctaagtcataaccaatttagtggtcacattcctcaaagtattgggaaccttt |
36025238 |
T |
|
| Q |
128 |
caaatcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtcttagatgcttcaatgtttctca |
227 |
Q |
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||| |||| ||| ||||||||||||| || |||||| |||||||||||| |||||||||||| | | | | |||||||| | ||||||||||||||| |
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| T |
36025237 |
caatgcttagacagcttgatttgtcactgaataatcttagtggagaaattccagtttcctttgacaatctgcctagtcttaatttcttcaatgtttctca |
36025138 |
T |
|
| Q |
228 |
ta |
229 |
Q |
| |
|
|| |
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|
| T |
36025137 |
ta |
36025136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 36005683 - 36005631
Alignment:
| Q |
78 |
tagtcataaccaatttagtggtcacattcctcaaagtattggaaatatttcaa |
130 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
36005683 |
tagtcataaccaatttagtggttacattcgtcaaagtattggaaacatttcaa |
36005631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 22792145 - 22792031
Alignment:
| Q |
65 |
gagagatttctcttagtcataaccaatttagtggtcacattcctcaaagta-ttggaaatatttcaaatcttaaacaacttgatttgtc-accgagtaat |
162 |
Q |
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||||||||| || ||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||| |||| |||||||| || | ||| |||| |
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| T |
22792145 |
gagagatttttcatagtcatcaccaatttagtggtcacattcctcaaaaaatttggaaacatttcaaatcttcaacagcttgatttctcaaacgaataat |
22792046 |
T |
|
| Q |
163 |
ctcagtggagaaatt |
177 |
Q |
| |
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|| |||||||||||| |
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|
| T |
22792045 |
cttagtggagaaatt |
22792031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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