View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_78 (Length: 250)
Name: NF1739_low_78
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_78 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 6274098 - 6273859
Alignment:
| Q |
11 |
ttattctctagagttgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaacatta |
110 |
Q |
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| T |
6274098 |
ttattctctagagttgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaacatta |
6273999 |
T |
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| Q |
111 |
gatcctagacatatattcaatagttaaaaagaggattgaaaatttgttcgcaacctcaatctaagatgggatattcaggtttttaatgtctaaacatcaa |
210 |
Q |
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| T |
6273998 |
gatcctagacatatattcaatagttaaaaagaggattgaaaatttgttcgcaacctcaatctaagatgggatattcaggtttttaatgtctaaacatcaa |
6273899 |
T |
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| Q |
211 |
tggttgtggccgcatcaactctattttgccgcaattttaa |
250 |
Q |
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| T |
6273898 |
tggttgtggccgcatcaactctattttgccgcaattttaa |
6273859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 6288348 - 6288181
Alignment:
| Q |
11 |
ttattctctagagttgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaacatta |
110 |
Q |
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| T |
6288348 |
ttattctttagaattgtctgcggtaatatataaagactgggttttcaccgatcaaggtttgcctaatgatctacttaaaaggtaaccttacaaaacatta |
6288249 |
T |
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| Q |
111 |
gatcctagacatatattcaatagttaaaaagaggattgaaaatttgttcgcaacctcaatctaagatg |
178 |
Q |
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| T |
6288248 |
gatcctggaaatatattcagtagttgaaacgaggattgaaaaagtgttcacaaccacgatctaagatg |
6288181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 6331477 - 6331372
Alignment:
| Q |
11 |
ttattctctagagttgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaacatta |
110 |
Q |
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| T |
6331477 |
ttattctttagaattgtctgctctattatataaggattgggttttcatagagcacggtcttcctaatgatttactgaaaaggtaaccttacaaaatatta |
6331378 |
T |
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| Q |
111 |
gatcct |
116 |
Q |
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| T |
6331377 |
gatcct |
6331372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 7458645 - 7458564
Alignment:
| Q |
25 |
tgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaac |
106 |
Q |
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| T |
7458645 |
tgtctgctgttgtttacaaggattggaatttcaccgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaaac |
7458564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 7471047 - 7470966
Alignment:
| Q |
25 |
tgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaac |
106 |
Q |
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| T |
7471047 |
tgtctgctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaaac |
7470966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 6320956 - 6320876
Alignment:
| Q |
25 |
tgtctgctgtattatataaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaa |
105 |
Q |
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| T |
6320956 |
tgtcttctgtattatataaggattgggttttcccagatcaaggactacctaatgatctacttaaaaggtaaccttcaaaaa |
6320876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 6362708 - 6362670
Alignment:
| Q |
72 |
cctaatgatctactcaaaaggtaaccttaaaaaacatta |
110 |
Q |
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| T |
6362708 |
cctaatgatctaatcaaaaggtaaccttacaaaacatta |
6362670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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