View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_79 (Length: 250)

Name: NF1739_low_79

Description: NF1739

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1739_low_79

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 225; E-Value: 1e-124

Query Start/End: Original strand, 14 - 250

Target Start/End: Complemental strand, 24107781 - 24107545

Alignment:

Q	14	ttcttgagagggtccactttacccgcgtttccttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttg	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24107781	ttcttgagagggtccactttacccgcgtttccttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttg	24107682	T

Q	114	tttatttgttctgacatttacttcatttgcgaaattttcatttgttgaatgttatcttataaatgtttgttcttaaaatattttcttgcgacaggattct	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24107681	tttatttgttctgacatttacttcatttgcgaaattttcatttgttgaatcttatcttataaatgtctgttcttacaatattttcttgcgacaggattct	24107582	T

Q	214	tatgattttcatttgtgtgtgtgttgtttattgtttt	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24107581	tatgattttcatttgtgtgtgtgttgtttattgtttt	24107545	T

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Target: chr3; HSP #2

Raw Score: 82; E-Value: 8e-39

Query Start/End: Original strand, 44 - 177

Target Start/End: Complemental strand, 24114452 - 24114320

Alignment:

Q	44	ccttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatttgc	143	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\| \|
T	24114452	ccttccatcgcctacaacttcgatagcaggttatcattttttttt-ataattaaattaacaatctctttgtttatttattcttacatttacgtaatttac	24114354	T

Q	144	gaaattttcatttgttgaatgttatcttataaat	177	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	24114353	gtaattttcatttgttgaatcttatcttataaat	24114320	T

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Target: chr3; HSP #3

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 46 - 140

Target Start/End: Original strand, 24616354 - 24616448

Alignment:

Q	46	ttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatt	140	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	24616354	ttccatcgcctacaactacgatagcaggttatcatttttttttcataattaaattagcaatctctttgtttatttattctgacattcacttcatt	24616448	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 190 - 229

Target Start/End: Original strand, 24616449 - 24616488

Alignment:

Q	190	aatattttcttgcgacaggattcttatgattttcatttgt	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24616449	aatattttcttgggacaggattcttatgattttcatttgt	24616488	T

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Target: chr3; HSP #5

Raw Score: 34; E-Value: 0.0000000003

Query Start/End: Original strand, 194 - 235

Target Start/End: Complemental strand, 24114318 - 24114277

Alignment:

Q	194	ttttcttgcgacaggattcttatgattttcatttgtgtgtgt	235	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24114318	ttttcttgggacaggactcttatgattttcatttgtgtgtgt	24114277	T

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