View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_8 (Length: 582)
Name: NF1739_low_8
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 219 - 566
Target Start/End: Complemental strand, 12720758 - 12720411
Alignment:
| Q |
219 |
ggtggcctctaatatgaaccccttttttgaaggaccaaccatggaccctctaaaattacatgctattgaaggtcatttgttatttccttaagtttatata |
318 |
Q |
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| T |
12720758 |
ggtggcctctaatatggacctcttttttgaaggaccaaccatggaccctctaaaattatatgctattgaaggtcatttgttatttccttaagtttatata |
12720659 |
T |
|
| Q |
319 |
aaaacaatattgttaattaggtaatttacagttttgcccatcagtattttgttatttttcaagagaatcacgggaacctttgttcacttttctttccata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12720658 |
aaaacaatattgttaattaggtaatttacagttttgcccatcagtattttgttatttttcaagagaatcacgggaaccttttttcacttttctttccata |
12720559 |
T |
|
| Q |
419 |
tcatatcacgttgaaatactctcaccatctcactccttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttccttttcat |
518 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12720558 |
tcatatcacgttgaaacactctcaccatctcacttcttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttccttttcat |
12720459 |
T |
|
| Q |
519 |
atgataatcgcgattgtgttgttttgaatcagactcgccgcatattcc |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12720458 |
atgataatcgcgattgtgttgttttgaatcagactcgcagcatattcc |
12720411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 223 - 520
Target Start/End: Complemental strand, 34081829 - 34081538
Alignment:
| Q |
223 |
gcctctaatatgaaccccttttttgaaggaccaaccatggaccctctaaaattacatgctattgaaggtcatttgttatttccttaagtttatataaaaa |
322 |
Q |
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| T |
34081829 |
gcctctaatatgaaccctttttttgatggaccaatcatggaccctctaaaattatatgctattgaaggtcatttgttatttccttaagtttatataaaaa |
34081730 |
T |
|
| Q |
323 |
caatattgttaattaggtaatttacagttttgcccatcagtattttgttatttttcaagagaatcacgggaacctttgtt-cacttttctttccatatca |
421 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||| || ||||| ||| || || ||||||||| || |
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| T |
34081729 |
caatattgttaattaggtaatttacagttttgcccatcaatgtgttgttatttttgaagagaat-actggaactttttttccagttttctttc-----ca |
34081636 |
T |
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| Q |
422 |
tatcacgttgaaatactctcaccatctcactccttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttccttttcatat |
520 |
Q |
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| T |
34081635 |
catcacgttgaaactttctcaccatctcactccttggattcaagtgaaacttcttccttcttttaatcaaact-gcttattcctttttccttttcatat |
34081538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 17113164 - 17112995
Alignment:
| Q |
45 |
ttggaggcattgttgcgtaaggaactcaactcagtcttgttgggaatagtggctaaagaattgaatccaagtgatgatatgatgtctataacaaccatac |
144 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
17113164 |
ttggaggcgttgttgcgtaaggaactcaactcagtcttgttggcaatagtggctaaagaattgaatccaagtgatgat-----gtttataacaaccatac |
17113070 |
T |
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| Q |
145 |
atgagaaaggtgctgcttttaacaattatttttggataatgtttgcctttgtttgattcaaagatttaaatgagg |
219 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17113069 |
atgagaaagttgctgcttttaaccattatttttggataatgtttgcctttatttgattcaaagatttaaatgagg |
17112995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 314 - 520
Target Start/End: Complemental strand, 43621699 - 43621499
Alignment:
| Q |
314 |
atataaaaacaatattgttaattaggtaatttacagttttgcccatcagtattttgttatttttcaagagaatcacgggaacctttgttc-acttttctt |
412 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||| | | ||||||||||| |||||||| || ||||||||| ||| | ||||||| |
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| T |
43621699 |
atataaaaacaatattattaattaagtaatttacagttttgcccatcaatgtgttgttatttttgaagagaat-actggaaccttttttccagttttctt |
43621601 |
T |
|
| Q |
413 |
tccatatcatatcacgttgaaatactctcaccatctcactccttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttcct |
512 |
Q |
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|||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| || |||||||| ||||| |
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| T |
43621600 |
tccacatca-----cgttgaaactttctcaccatctcactccttggattcaagtgaaacttcttccttcttttaatcaaact-gcttattcctttttcct |
43621507 |
T |
|
| Q |
513 |
tttcatat |
520 |
Q |
| |
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|||||||| |
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| T |
43621506 |
tttcatat |
43621499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 43621831 - 43621713
Alignment:
| Q |
210 |
ttaaatgagggtggcctctaatatgaaccccttttttgaaggaccaaccatggaccctctaaaattacatgctattgaaggtcatttgttatttccttaa |
309 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||||| ||||||||||| |
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| T |
43621831 |
ttaaatcagggtggcctctaatatggaccctttttttgatggaccaatcatggaccctctaaaattacctgctgttgcaggtcatttg-tatttccttaa |
43621733 |
T |
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| Q |
310 |
gtttatataaaaacaatatt |
329 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43621732 |
gtttatataaaaacaatatt |
43621713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 520
Target Start/End: Original strand, 16360025 - 16360121
Alignment:
| Q |
423 |
atcacgttgaaatactctcaccatctcactccttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttccttttcatat |
520 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| || |||||||| ||||||||||||| |
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| T |
16360025 |
atcacgttgaaactttctcaccatctcactccttggattcaagtgaaacttcttccttcttttaatcaaact-gcttattcctttttccttttcatat |
16360121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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