View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_83 (Length: 249)
Name: NF1739_low_83
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 45271213 - 45271456
Alignment:
| Q |
1 |
ccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgac |
100 |
Q |
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| T |
45271213 |
ccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgac |
45271312 |
T |
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| Q |
101 |
gggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgct |
200 |
Q |
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| T |
45271313 |
gggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgct |
45271412 |
T |
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| Q |
201 |
gtacaaactctgaacatggaattgctccttgatcttcatctcac |
244 |
Q |
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| T |
45271413 |
gtacaaactctgaacatggaattgctccttgatcttcttctcac |
45271456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 45282989 - 45283230
Alignment:
| Q |
3 |
ttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgg |
102 |
Q |
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| T |
45282989 |
ttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgg |
45283088 |
T |
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| Q |
103 |
gaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgctgt |
202 |
Q |
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| T |
45283089 |
gaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgt |
45283188 |
T |
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| Q |
203 |
acaaactctgaacatggaattgctccttgatcttcatctcac |
244 |
Q |
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| T |
45283189 |
ccaaactctgaacatggaattgctccttgatcttcttctcac |
45283230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 45274748 - 45274989
Alignment:
| Q |
3 |
ttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgg |
102 |
Q |
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| T |
45274748 |
ttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgg |
45274847 |
T |
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| Q |
103 |
gaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgctgt |
202 |
Q |
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| T |
45274848 |
gaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgt |
45274947 |
T |
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| Q |
203 |
acaaactctgaacatggaattgctccttgatcttcatctcac |
244 |
Q |
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| T |
45274948 |
ccaaactctgaacatggaattgctctttgattttcttctcac |
45274989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 45294386 - 45294618
Alignment:
| Q |
12 |
cattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaaggaggt |
111 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45294386 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
45294485 |
T |
|
| Q |
112 |
ttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgctgtacaaactct |
211 |
Q |
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| T |
45294486 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
45294585 |
T |
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| Q |
212 |
gaacatggaattgctccttgatcttcatctcac |
244 |
Q |
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| T |
45294586 |
gaacgtctaattgctccttgatcttcttctcac |
45294618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 45303346 - 45303578
Alignment:
| Q |
12 |
cattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaaggaggt |
111 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45303346 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
45303445 |
T |
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| Q |
112 |
ttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgctgtacaaactct |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
45303446 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
45303545 |
T |
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| Q |
212 |
gaacatggaattgctccttgatcttcatctcac |
244 |
Q |
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| T |
45303546 |
gaacgtctaattgctccttgatcttcttctcac |
45303578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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