View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_84 (Length: 248)
Name: NF1739_low_84
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 40087754 - 40087889
Alignment:
| Q |
96 |
gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat |
195 |
Q |
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| T |
40087754 |
gaacctgtgggtatttcgaaggatgatatattgtcaaagactggattacttgagcaaataaatatcacagctgatagaagtgactacttgtggtactcat |
40087853 |
T |
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| Q |
196 |
taaggtatacaagcctccaaatttgaaagatatttt |
231 |
Q |
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| T |
40087854 |
taaggtatacaagcctccaaatttgaaagatatttt |
40087889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 40061907 - 40062042
Alignment:
| Q |
96 |
gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat |
195 |
Q |
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| T |
40061907 |
gaacctgtgggtatttcgaaggatgatatattttcaaaaactggattacttgagcaaataaatatcaccgctgatagaagtgactacttgtggtactcat |
40062006 |
T |
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| Q |
196 |
taaggtatacaagcctccaaatttgaaagatatttt |
231 |
Q |
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| T |
40062007 |
taaggtatacaagcctccaaatttgaaagatatttt |
40062042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 40080042 - 40080176
Alignment:
| Q |
96 |
gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||| |
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| T |
40080042 |
gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaataccacagctgatagaagtgattatttgtggtactcat |
40080141 |
T |
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| Q |
196 |
taaggtatacaagcctccaaatttgaaagatattt |
230 |
Q |
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| T |
40080142 |
taaggtacacaagcctccaaatttgaaagatattt |
40080176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1573746 - 1573818
Alignment:
| Q |
18 |
agaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctattgttccagtgaac |
90 |
Q |
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| T |
1573746 |
agaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctgttgttccattgaac |
1573818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 22013690 - 22013633
Alignment:
| Q |
147 |
gagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtata |
204 |
Q |
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| T |
22013690 |
gagcaaataaacacgacggctgatagaagtgactacttatggtactcattaaggtata |
22013633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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