View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_86 (Length: 247)
Name: NF1739_low_86
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 21439242 - 21439142
Alignment:
| Q |
7 |
aattattctttttatcaaaacatataatgatgaatgtataaattaattctctctcattataggtaaacttataagacaacggtaatagtcaataaattaa |
106 |
Q |
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| T |
21439242 |
aattattctttttatcaa--catataatgatgaatgtataaattaattctctc--attataggtaaatttataagacaacggtaatagtcaataaattaa |
21439147 |
T |
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| Q |
107 |
atatt |
111 |
Q |
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||||| |
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| T |
21439146 |
atatt |
21439142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 4913314 - 4913189
Alignment:
| Q |
37 |
tgaatgtataaattaattctctctcattataggtaaacttataagacaacggtaatagtcaataaattaaatattgctacaaattttcttaattttcgtg |
136 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||| |||||| | ||| ||||||||||||||| | | |
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| T |
4913314 |
tgaatgtataaattaattctctctcattataggtaaatttatcagacaatgctaatagtcaataaagtaaatactactataaattttcttaatttccacg |
4913215 |
T |
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| Q |
137 |
attttgtcaacgatatactatattta |
162 |
Q |
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| T |
4913214 |
attttgtcaacaatatactatattta |
4913189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 21439146 - 21439055
Alignment:
| Q |
156 |
atatttagtgacggaggaggtagtatatgagnnnnnnngtgtcattttgtggtgtaaagtaaactatctgcaaattggctttaaaaccttac |
247 |
Q |
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| T |
21439146 |
atatttagtgacggaggaggtagtatatgagtttttttgtgtcattttgtggtgtaaagtaaactatctgcaaattggctttaaaaccttac |
21439055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 4900833 - 4900787
Alignment:
| Q |
113 |
ctacaaattttcttaattttcgtgattttgtcaacgatatactatat |
159 |
Q |
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| T |
4900833 |
ctacaaattttcttaatttccgtgattttgtgaacaatatactatat |
4900787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 4745993 - 4746037
Alignment:
| Q |
201 |
tttgtggtgtaaagtaaactatctgcaaattggctttaaaacctt |
245 |
Q |
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| T |
4745993 |
tttgtggtgtaaagtaaactatgtgcaaattgcctttaaatcctt |
4746037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 4900756 - 4900711
Alignment:
| Q |
194 |
gtgtcattttgtggtgtaaagtaaactatctgcaaattggctttaaa |
240 |
Q |
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||||||||| |||||||||||||||| || ||||||||||||||||| |
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| T |
4900756 |
gtgtcattt-gtggtgtaaagtaaacaatgtgcaaattggctttaaa |
4900711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 4913161 - 4913116
Alignment:
| Q |
194 |
gtgtcattttgtggtgtaaagtaaactatctgcaaattggctttaaa |
240 |
Q |
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||||||||| ||||||||||||||||||| |||||||||| |||||| |
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|
| T |
4913161 |
gtgtcattt-gtggtgtaaagtaaactatgtgcaaattggatttaaa |
4913116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 4726658 - 4726702
Alignment:
| Q |
201 |
tttgtggtgtaaagtaaactatctgcaaattggctttaaaacctt |
245 |
Q |
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||||||||||||||||| |||| ||||||||||||| ||| |||| |
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| T |
4726658 |
tttgtggtgtaaagtaagctatgtgcaaattggcttgaaatcctt |
4726702 |
T |
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