View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_87 (Length: 247)
Name: NF1739_low_87
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25739704 - 25739467
Alignment:
| Q |
1 |
gaaaatcctgagatcaaagaaagcatgtaaactctatatatagagcaatataggagcttaattttctcaattagtaagctcatgttgtgttgcttgctgg |
100 |
Q |
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| T |
25739704 |
gaaaatcctgagatcaaagaaagcatgtaaactctatatatagagcaatataggagcttaattttctcatttagtaagctcatgttgtgttgcttgctgg |
25739605 |
T |
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| Q |
101 |
ttgtggtggtcttgatttgagtgaaacaatatggacgtgacttctttttacgcccagttatgaggtgtttccgaaagtttatgcttaggaaaagctagtg |
200 |
Q |
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| T |
25739604 |
ttgtggtggtcttgatttgagtgaaacaatatggacgtgacttctttttacgcccagttatgaggtgtttccgaaagtttatgcttaggaaaagctagtg |
25739505 |
T |
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| Q |
201 |
tttataaacatattgagttgtgcttgaattcttctgtg |
238 |
Q |
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| T |
25739504 |
tttataaacatattgagttgtgctcgaattcttctgtg |
25739467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25745748 - 25745486
Alignment:
| Q |
1 |
gaaaatcctgagatcaaagaaagcatgtaaactctata-----------tatagagcaatataggagcttaattttctcaa--ttagtaagctcatgttg |
87 |
Q |
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| T |
25745748 |
gaaaatcctgagatcaaagatagcatgtaaactccatagaaattataaatatagagcaatataagagctcaattttctcatatttagtaagctcttgttg |
25745649 |
T |
|
| Q |
88 |
tgttgcttgctggttgtggtggtcttgatttgagtgaaa---------caatatggacgtgac---ttctttttacgcccagttatgaggtgtttccgaa |
175 |
Q |
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| T |
25745648 |
cattgcttgctggttttggtggtcttgattagagtgaaagttgattagcaatacggacgggacaacttctttttaggccaagttctgagatgtttttgaa |
25745549 |
T |
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| Q |
176 |
agtttatgcttaggaaaagctagtgtttataaacatattgagttgtgcttgaattcttctgtg |
238 |
Q |
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| T |
25745548 |
agtttatccttaggtaaagctggtgtttacaaacatattgagttgttcttgaattcttctgtg |
25745486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 25731872 - 25731781
Alignment:
| Q |
147 |
tttacgcccagttatgaggtgtttccgaaagtttatgcttaggaaaagctagtgtttataaacatattgagttgtgcttgaattcttctgtg |
238 |
Q |
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|||| ||| ||||||||||||||| ||||| |||| |||||| ||||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
25731872 |
tttaggccaagttatgaggtgtttatgaaagattatccttaggtaaagctagtgtttgcagacatattgagttgtgtttgaattcttctgtg |
25731781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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