View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_92 (Length: 240)
Name: NF1739_low_92
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_92 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 45282765 - 45282984
Alignment:
| Q |
21 |
ctaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaa |
120 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282765 |
ctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaa |
45282864 |
T |
|
| Q |
121 |
cgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45282865 |
cgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacagcatt |
45282964 |
T |
|
| Q |
221 |
aggcctaatattttctctcc |
240 |
Q |
| |
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|||| |||||||| |||||| |
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| T |
45282965 |
aggcataatatttgctctcc |
45282984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 45270991 - 45271210
Alignment:
| Q |
21 |
ctaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaa |
120 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270991 |
ctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaa |
45271090 |
T |
|
| Q |
121 |
cgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacatt |
220 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
45271091 |
cgtagataacatatctgtctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaacagcatt |
45271190 |
T |
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| Q |
221 |
aggcctaatattttctctcc |
240 |
Q |
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||||||||||||| |||||| |
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| T |
45271191 |
aggcctaatatttgctctcc |
45271210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 45274524 - 45274743
Alignment:
| Q |
21 |
ctaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaa |
120 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
45274524 |
ctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaa |
45274623 |
T |
|
| Q |
121 |
cgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacatt |
220 |
Q |
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||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
45274624 |
cgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaacagcatt |
45274723 |
T |
|
| Q |
221 |
aggcctaatattttctctcc |
240 |
Q |
| |
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||||||||||||| |||||| |
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| T |
45274724 |
aggcctaatatttgctctcc |
45274743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 45294162 - 45294372
Alignment:
| Q |
30 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
129 |
Q |
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|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
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| T |
45294162 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45294261 |
T |
|
| Q |
130 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
229 |
Q |
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||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |
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| T |
45294262 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45294361 |
T |
|
| Q |
230 |
attttctctcc |
240 |
Q |
| |
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|||| |||||| |
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|
| T |
45294362 |
atttgctctcc |
45294372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 45303122 - 45303332
Alignment:
| Q |
30 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
129 |
Q |
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|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
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| T |
45303122 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45303221 |
T |
|
| Q |
130 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |
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| T |
45303222 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45303321 |
T |
|
| Q |
230 |
attttctctcc |
240 |
Q |
| |
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|||| |||||| |
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| T |
45303322 |
atttgctctcc |
45303332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 38588231 - 38588302
Alignment:
| Q |
90 |
gtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagag |
161 |
Q |
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|||||||| ||||||||||| || ||||| || ||||||| |||||||||||| ||||||||| |||||| |
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| T |
38588231 |
gtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
96 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
141 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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