View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-1 (Length: 468)
Name: NF1740-Insertion-1
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 5286060 - 5286520
Alignment:
| Q |
8 |
aaagagacatgtaaaaaattatatatatgcagaactacttttgcaaatctgtctcttcaactcatatatgcagactttcaaagcccccttactttggcaa |
107 |
Q |
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| T |
5286060 |
aaagagacatgtaaaaaattatatatatgcagaactacttttgcaaatctgtctcttcaactcatatatgcagactttcaaagcccc-ttactttggcaa |
5286158 |
T |
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| Q |
108 |
actttcaattcaaaactgtgacaaaaattctggctgaaagacttggtatatagtggcaggnnnnnnn-atatttgtgacaactggtgcacctactcctat |
206 |
Q |
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| T |
5286159 |
actttcaattcaaaactgcgacaaaaattctggctgaaagacttggtatatagtggcaggttttttttatatttgtgacaactggtgcacctactcctat |
5286258 |
T |
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| Q |
207 |
gcatgttacaaaaagaatgacactcccaagtaattatttttatgctacaaatgatgtgttcattttctataaagggaccaaagctaacatgttgtgcatt |
306 |
Q |
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| T |
5286259 |
gcatgttacaaaaagaatgacactcccaagtaattatttttatgctacaaatgatgtgttcattttctataaagggaccaaagctaacatgttgtgcatt |
5286358 |
T |
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| Q |
307 |
tgaaaatcttcagaatatatttggcataggtaatcttccattcatatatttggctgttcctatttgcaaattgtaactagacaaaaggtgcatttttgga |
406 |
Q |
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| T |
5286359 |
tgaaaatcttcagaatatatttggcataggtaatcttccattcatatatttggctgttcctatttgcaaattgtaactagacaaaaggtacatttttgga |
5286458 |
T |
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| Q |
407 |
cagatagatggctatctgaccctcttgtggagttactcaacatccctccttagttgcatgca |
468 |
Q |
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| T |
5286459 |
cagatagatggctatctgaccctcttgtggagttactcaacatccctccttagttgcatgca |
5286520 |
T |
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