View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-11 (Length: 483)
Name: NF1740-Insertion-11
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 34042536 - 34043011
Alignment:
| Q |
8 |
gaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcacaacccctcatgacattctttttcgcaat |
107 |
Q |
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| T |
34042536 |
gaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcacaacccctcatgacattctttttcgcaat |
34042635 |
T |
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| Q |
108 |
cttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatttcatcatcgattcattgagaaaattcatgtcatttgcatgc |
207 |
Q |
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| T |
34042636 |
cttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatttcatcatcgattcattgagaaaattcatgccatttgcatgc |
34042735 |
T |
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| Q |
208 |
tcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattcttctcccgctttgtgtttcatgagaaattt |
307 |
Q |
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| T |
34042736 |
tcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattcttctcccgctttgtgtttcatgagaaattt |
34042835 |
T |
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| Q |
308 |
cttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcct |
407 |
Q |
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| T |
34042836 |
cttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtgatgatcct |
34042935 |
T |
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| Q |
408 |
gattcttttattccgtaccttgcgatgarctatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaa |
483 |
Q |
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| T |
34042936 |
gattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaa |
34043011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 4046611 - 4046456
Alignment:
| Q |
9 |
aaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcacaacccctcatgacattctttttcgcaatc |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| | || |||||||||||||||||||| |
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| T |
4046611 |
aaagaacttgatatcataaagaactacttcaatgtcgaatccgagttcatcgccgcagcagacttcttcacaagctttcgtgacattctttttcgcaatc |
4046512 |
T |
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| Q |
109 |
ttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaa |
164 |
Q |
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| T |
4046511 |
ttgctgtttctgtaatcgtcaaggtcagtcatcattttgagctttgttttcttgaa |
4046456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 319 - 483
Target Start/End: Complemental strand, 4046366 - 4046202
Alignment:
| Q |
319 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
418 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
419 |
tccgtaccttgcgatgarctatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaa |
483 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggaggtaa |
4046202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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