View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740-Insertion-12 (Length: 503)
Name: NF1740-Insertion-12
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-12 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 22894933 - 22895295
Alignment:
| Q |
7 |
agcaccatctacacaataaaaactagacattagataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22894933 |
agcaccatctacacaataaaaacaagacattagataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
22895032 |
T |
|
| Q |
107 |
aaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagcca |
206 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22895033 |
aaagtgcatcttgatactttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcaaatacaaaaatagtaagcca |
22895132 |
T |
|
| Q |
207 |
atagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22895133 |
atagcataaaaatgatgaaaatattgataccaattcaaaccacaagactttgaggaaaaatacctacatattatcaacaaatgaaaatcacaagctgctc |
22895232 |
T |
|
| Q |
307 |
aattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895233 |
aattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
22895295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 422 - 503
Target Start/End: Original strand, 22895348 - 22895429
Alignment:
| Q |
422 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcag |
503 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895348 |
cacatactagcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcag |
22895429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 15976019 - 15976163
Alignment:
| Q |
215 |
aaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttac |
314 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| || ||||||||||||||||| | || |||||||||| |||||||||||||||||| || || |
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|
| T |
15976019 |
aaaatggtgaaaatattgaatcaaattcaaaccacaagacattgagcaaaaatacctatgtgttttcaacaaatgcaaatcacaagctgctcaaattcac |
15976118 |
T |
|
| Q |
315 |
tcaaattaatcttctgattctgcataatcaaaattagatgatatc |
359 |
Q |
| |
|
| |||| || ||| || |||||||||||||||| ||||||||||| |
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|
| T |
15976119 |
tgaaatcaaacttatggttctgcataatcaaaactagatgatatc |
15976163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 15974574 - 15974687
Alignment:
| Q |
33 |
acattagataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagatt |
132 |
Q |
| |
|
|||||||||||||||||||| || || |||| | ||||| ||||| ||||||||| ||| |||| |||||||||| | ||| |||| | |||| ||| |
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|
| T |
15974574 |
acattagataaactataattttacaaacagactagataaaataaacatgataaaatgcttgtatcaaccaaagtaaaataaatcatgatacgttgaaatt |
15974673 |
T |
|
| Q |
133 |
caaagcaaatttgc |
146 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
15974674 |
caaagtaaatttgc |
15974687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 15975820 - 15975939
Alignment:
| Q |
25 |
aaaactagacattagataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgct |
124 |
Q |
| |
|
||||| ||||||||| ||| |||||||| || || | || | ||||| ||||| ||||||||| |||||| ||||||||||||| | ||| | | || |
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|
| T |
15975820 |
aaaacaagacattaggtaacctataattttacaaactgactagataaaataaacatgataaaatgcttacaacatccaaagtaaaagggatcataacact |
15975919 |
T |
|
| Q |
125 |
ttgagattcaaagcaaattt |
144 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
15975920 |
ttgagattcaaagtaaattt |
15975939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 16297446 - 16297808
Alignment:
| Q |
7 |
agcaccatctacacaataaaaactagacattagataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
106 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16297446 |
agcatcatctacacaacaaaaacaagacattagataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
16297545 |
T |
|
| Q |
107 |
aaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagcca |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297546 |
aaattgcatcttgatgctttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagcca |
16297645 |
T |
|
| Q |
207 |
atagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctc |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16297646 |
atagcataaaaatgttgaaaatattgataccaattcaaaccacaagactttgagcaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctc |
16297745 |
T |
|
| Q |
307 |
aattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297746 |
aattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
16297808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 16305148 - 16305510
Alignment:
| Q |
7 |
agcaccatctacacaataaaaactagacattagataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
106 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305148 |
agcatcatctacacaacaaaaacaagacattagataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagt |
16305247 |
T |
|
| Q |
107 |
aaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagcca |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16305248 |
aaattgcatcttgatgctttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcatatacaaaaatagtaagcca |
16305347 |
T |
|
| Q |
207 |
atagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctc |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305348 |
atagcataaaaatgttgaaaatattgataccaattcaaaccacaagactttgagtaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctc |
16305447 |
T |
|
| Q |
307 |
aattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305448 |
aattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
16305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 16297861 - 16297940
Alignment:
| Q |
422 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297861 |
cacatactggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16297940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 16305563 - 16305642
Alignment:
| Q |
422 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
501 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305563 |
cacatacttgcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16305642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 3873779 - 3874009
Alignment:
| Q |
68 |
ataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgc---------ccatcaatagag |
158 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
3873779 |
ataaaataaacatgataaaatacttacatcatccaaagtaaaatggatcatgatgctttaagattcaaagcaaatttgcaacttaacatcatccatagac |
3873878 |
T |
|
| Q |
159 |
agcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttg |
258 |
Q |
| |
|
| || ||||| |||||| |||||||||||| |||||| |||| ||| | ||| |||| | |||||||||||| | | |||||||||||| || ||| |
|
|
| T |
3873879 |
aacattggcatgcttaattaaagctgcagatgcaaaaacggtaaaccacaaacatgaaaacggtgaaaatattgaatcaatttcaaaccacaagacattg |
3873978 |
T |
|
| Q |
259 |
agcaaaaatacctacatattatcaacaaatg |
289 |
Q |
| |
|
||||| |||||||| |||| |||||||||| |
|
|
| T |
3873979 |
agcaagaatacctatgtattttcaacaaatg |
3874009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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