View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-2 (Length: 138)
Name: NF1740-Insertion-2
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 2e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 18575467 - 18575598
Alignment:
| Q |
7 |
agtaaatttatcatcttattgttgttgagaatgaatcatgtttcttactttttgtattgattctccaaaaaagattagattttgattgttttcattctaa |
106 |
Q |
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| T |
18575467 |
agtaaatttatcatcttattgttgttgagaatgaatcatgttttttactttttgtattgattctccaaaaaagattagattttgattgttttcattgtaa |
18575566 |
T |
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| Q |
107 |
tccagcttctgggtcatgatcattttttaaga |
138 |
Q |
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| T |
18575567 |
ttcagctcctgggtcatgatcattttttaaga |
18575598 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 18575633 - 18575749
Alignment:
| Q |
23 |
tattgttgttgagaatgaatcatgtttctt-actttttgtattgattctccaaaaaagattagattttgattgttttcattctaatccagcttctgggtc |
121 |
Q |
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| T |
18575633 |
tattgttgttgagattgaatcatatttttttacttcttgtgttgattttccaaaaaagattagattttgattgttttcattgcaattcagcttcttggtc |
18575732 |
T |
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| Q |
122 |
atgatcattttttaaga |
138 |
Q |
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| T |
18575733 |
atgatcattttttaaga |
18575749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 18575784 - 18575901
Alignment:
| Q |
23 |
tattgttgttgagaatgaatcatgt-ttcttactttttgtattgattctccaaaaaa-gattagattttgattgttttcattctaatccagcttctgggt |
120 |
Q |
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| T |
18575784 |
tattgttgttgagattggatcatatctttttactttttatgttgattctacaaaaaaagactagattttgattcttttcattgaaattcagcttcttgat |
18575883 |
T |
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| Q |
121 |
catgatcattttttaaga |
138 |
Q |
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| T |
18575884 |
catgatcattttttaaga |
18575901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 18575980 - 18576060
Alignment:
| Q |
55 |
tttttgtattgattctccaaaaaagattagattttgattgttttcattctaatccagcttctgggtcatgatcatttttta |
135 |
Q |
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| T |
18575980 |
tttttgtattgattttccaagaaagattggatttttattcttttcaatgcaattgagcttctgagccatgatcatttttta |
18576060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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