View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-4 (Length: 291)
Name: NF1740-Insertion-4
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 1052510 - 1052269
Alignment:
| Q |
6 |
catgactcacattccaacacagtctttcattggttaaaattgatatggaccacacgaaatttatattggacctacataatttggtgggagccacataaat |
105 |
Q |
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| T |
1052510 |
catgactcacattctaacacagtcttttattggttaaaattgatatggatcacacgaaatttatattagaccagcataatttggtgggagccacataaat |
1052411 |
T |
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| Q |
106 |
ttcaaccgataaatgaaaaatat-attggatatatgttcctaacattattcataataagtttggctcatgttgttcaaggagaaacacgttgttactaga |
204 |
Q |
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| T |
1052410 |
ttcaaccgataaatgaaaaattttattggatatatgttcctaacattattcataataagtttggctcatgttgttcaaggagtaacacgttgttactaga |
1052311 |
T |
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| Q |
205 |
ctagtgatccactcatgtgcatctcgactaaattgatggatg |
246 |
Q |
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| T |
1052310 |
ctagtgatccactcatgtgcatctcgactaaattgatggatg |
1052269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 1052224 - 1052180
Alignment:
| Q |
245 |
tgttatcctttagatatggtgatttacataaatacttttgtggtg |
289 |
Q |
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| T |
1052224 |
tgttatcctttagatatggtgatttatataaatacttttgtggtg |
1052180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 17383783 - 17383858
Alignment:
| Q |
28 |
tctttcattggttaaaattgatatggaccacacgaaatttatattggacctacataatttggtgggagccacataa |
103 |
Q |
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| T |
17383783 |
tcttttattggttaaaagtcatatgggtcccaccaaatttctatgggacccacataatttggtgggacccacataa |
17383858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 2276300 - 2276366
Alignment:
| Q |
28 |
tctttcattggttaaaattgatatggaccacacgaaatttatattggacctacataatttggtggga |
94 |
Q |
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| T |
2276300 |
tctttgattggttaaaattcacatggatcccaccaaatttataagggacccacataatttggtggga |
2276366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 3907669 - 3907743
Alignment:
| Q |
20 |
caacacagtctttcattggttaaaattgatatggaccacacgaaatttatattggacctacataatttggtggga |
94 |
Q |
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||||||| ||||| ||||||||||||| | |||| | ||| |||||||||| ||||| |||| ||||||||||| |
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| T |
3907669 |
caacacactctttgattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtggga |
3907743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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