View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-5 (Length: 842)
Name: NF1740-Insertion-5
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-5 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 792; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 10 - 842
Target Start/End: Original strand, 41582475 - 41583306
Alignment:
| Q |
10 |
tagttaacataatattaattgnnnnnnnggatatggacattttgttcacagtacttctgttccgtagttgaaatcccagaagggcaggcacggcccgtct |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582475 |
tagttaacataatattaattgtttttttggatatggacattttgttcacagtacttctgttccgtagttgaaatcccagaagggcaggcacggcccgtct |
41582574 |
T |
|
| Q |
110 |
tatgatggataattgagtgtccagccaaaaagatactttcttcattaaactgacaatgtagtgagcaacagaaactttgctatttaccagacttgttagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582575 |
tatgatggataattgagtgtccagccaaaaagatactttcttcattaaactgacaatgtagtgagcaacagaaactttgctatttaccagacttgttagc |
41582674 |
T |
|
| Q |
210 |
atccaattaaggatgttattacttcttttgtagtgggtggtaaggagatggacaaagtatcttggacaggaagaaaccattaatttgacaatttggaaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41582675 |
atccaattaaggatgttattacttcttttgtagtgggtggtaaggagatggacaaagtatcttggacaggaagaaaccgttaatttgacaatttggaaca |
41582774 |
T |
|
| Q |
310 |
acagtgaaccaatttatagcttaaggctagtaaatgattcttccattgtttgtgcccattcctaagacaatgaagaagtcaaacaatatatttttctaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582775 |
acagtgaaccaatttatagcttaaggctagtaaatgattcttccattgtttgtgcccattcctaagacaatgaagaagtcaaacaatatatttttctaat |
41582874 |
T |
|
| Q |
410 |
ttcagagcaaattgggcaattagtttttcaagagatatccatgattaaatgttgtattatcttctgcttatttaatgtttttgaaataattcttgcttct |
509 |
Q |
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| T |
41582875 |
ttcagagcaaattgggcaattagtttttcaagagatatccatgattagatgttgtattatcttctgcttatttaatgtttttgaaataattcttgcttct |
41582974 |
T |
|
| Q |
510 |
tgcaatttcttttgaatggattcctctacttatacgggtcaagagtaaaagtttatgtaacgtctgctaataataacagttgtattttacgtcttgatcc |
609 |
Q |
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| T |
41582975 |
tgcaatttcttttgaatggattcctctacttatacgggtc-agagtaaaagtttatgtaacgtctgctaataataacagttgtattttacgtcttgatcc |
41583073 |
T |
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| Q |
610 |
ttgtattatctgttacacatttccaggtttaattaccttttatcatacatcatgtaccatacaagctttcattgcatttaattggatgactttgttcgca |
709 |
Q |
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| T |
41583074 |
ttgtattatctgttacacatttccaggtttaattaccttttatcatacatcatgtaccatacaagctttcattgcatttaattggatgactttgtttgca |
41583173 |
T |
|
| Q |
710 |
tgaaagctgggttatagctatgatatcgagcaatgagttgattataatgctatatcatctgataacttaacttggataatgaattcctttggagtcagtg |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583174 |
tgaaagctgggttatagctatgatatcgagcaatgagttgattataatgctatatcatctgataacttaacttggataatgaattcctttggagtcagtg |
41583273 |
T |
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| Q |
810 |
acatgatgagaaagtctgtgatgtgaggattgc |
842 |
Q |
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| T |
41583274 |
acatgatgagaaagtctgtgatgtgaggattgc |
41583306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 230 - 356
Target Start/End: Complemental strand, 41979439 - 41979313
Alignment:
| Q |
230 |
acttcttttgtagtgggtggtaaggagatggacaaagtatcttggacaggaagaaaccattaatttgacaatttggaacaacagtgaaccaatttatagc |
329 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||||| ||||||||| ||||||| ||| || |||||||||| |||||| | ||||||| |
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| T |
41979439 |
acttcttttgtagtggatcgtaaggaggtggacaaagtatcttggccaggaagaagccattaaactgatgatatggaacaacattgaaccgagttatagc |
41979340 |
T |
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| Q |
330 |
ttaaggctagtaaatgattcttccatt |
356 |
Q |
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| T |
41979339 |
ttaaggctagtaaatgcttcttccatt |
41979313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 581 - 762
Target Start/End: Complemental strand, 41978996 - 41978817
Alignment:
| Q |
581 |
aataacagttgtattttacgtctt-gatccttgtattatctgttacacatttccaggtttaattaccttttatcatacatcatgtaccatacaagctttc |
679 |
Q |
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|||||||||| |||||||| |||| | ||||||||||||| ||| || | | |||||||||| |||||||| | |||||| || ||| |||||||||| |
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| T |
41978996 |
aataacagttatattttacctctttgttccttgtattatcgtttattcactgctaggtttaattcccttttattaaacatcaggtcccacacaagctttc |
41978897 |
T |
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| Q |
680 |
attgcatttaattggatgactttgttcgcatgaaagctgggttatagctatgatatcga-gcaatgagttgattataatgctat |
762 |
Q |
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||||||| |||||||||||||||||||| || ||||||| || || ||||| || || |||||||||| |||| ||||| |
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| T |
41978896 |
attgcat----ttggatgactttgttcgcatcaagactgggttgcaggtaggatattgaggcgatgagttgatgataaggctat |
41978817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 41979523 - 41979468
Alignment:
| Q |
167 |
gtagtgagcaacagaaactttgctatttaccagacttgttagcatccaattaagga |
222 |
Q |
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| T |
41979523 |
gtagttagtaactgaaactttgctattcaccagacttgttagcatcaaattaagga |
41979468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 1221711 - 1221837
Alignment:
| Q |
230 |
acttcttttgtagtgggtggtaaggagatggacaaagtatcttggacaggaagaaaccattaatttgacaatttggaacaacagtgaaccaatttatagc |
329 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||||| |||||||| ||||||| |||| || ||||||||||||||||| | ||||||| |
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| T |
1221711 |
acttcttttgtagtggatcgtaaggaggtggacaaagtatcttggcaaggaagaagccattaaattgatgatatggaacaacagtgaaccgagttatagc |
1221810 |
T |
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| Q |
330 |
ttaaggctagtaaatgattcttccatt |
356 |
Q |
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| T |
1221811 |
ttaaggctagtaaatgcttcttccatt |
1221837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 1221627 - 1221682
Alignment:
| Q |
167 |
gtagtgagcaacagaaactttgctatttaccagacttgttagcatccaattaagga |
222 |
Q |
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||||| || ||| |||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
1221627 |
gtagttagtaactgaaactttgctattcaccagacttgttagcatcaaattaagga |
1221682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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