View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740-Insertion-9 (Length: 172)
Name: NF1740-Insertion-9
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740-Insertion-9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 4e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 18575467 - 18575632
Alignment:
| Q |
7 |
agtaaatttatcatcttattgttgttgagaatgaatcatgnnnnnnnnnnnnngtattgattctccaaaaaagattagattttgattgttttcattctaa |
106 |
Q |
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| T |
18575467 |
agtaaatttatcatcttattgttgttgagaatgaatcatgttttttactttttgtattgattctccaaaaaagattagattttgattgttttcattgtaa |
18575566 |
T |
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| Q |
107 |
ttcagcttctgggtcatgatcattttttaagatattgttgatcatcctattgcttggtttgcaaga |
172 |
Q |
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| T |
18575567 |
ttcagctcctgggtcatgatcattttttaagatattgttgatcatcctattgcttggtttgcaaga |
18575632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 18575674 - 18575783
Alignment:
| Q |
63 |
ttgattctccaaaaaagattagattttgattgttttcattctaattcagcttctgggtcatgatcattttttaagatattgttgatcatcctattgcttg |
162 |
Q |
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| T |
18575674 |
ttgattttccaaaaaagattagattttgattgttttcattgcaattcagcttcttggtcatgatcattttttaagatattgttgatcatcctattgcttg |
18575773 |
T |
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| Q |
163 |
gtttgcaaga |
172 |
Q |
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| T |
18575774 |
gtttgcaaga |
18575783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 18575836 - 18575931
Alignment:
| Q |
73 |
aaaaaagattagattttgattgttttcattctaattcagcttctgggtcatgatcattttttaagatattgttgatcatcctattgcttggtttgc |
168 |
Q |
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| T |
18575836 |
aaaaaagactagattttgattcttttcattgaaattcagcttcttgatcatgatcattttttaagatattttttatcatactattgtttggtttgc |
18575931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 18575985 - 18576060
Alignment:
| Q |
60 |
gtattgattctccaaaaaagattagattttgattgttttcattctaattcagcttctgggtcatgatcatttttta |
135 |
Q |
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| T |
18575985 |
gtattgattttccaagaaagattggatttttattcttttcaatgcaattgagcttctgagccatgatcatttttta |
18576060 |
T |
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