View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17400_low_3 (Length: 438)
Name: NF17400_low_3
Description: NF17400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17400_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 26 - 422
Target Start/End: Complemental strand, 23617547 - 23617151
Alignment:
| Q |
26 |
tatcagctgaaactgaaacactagaagacacctggtcagttgatttcccttccaatatgccagttggatgcagtggaaacaaatccaatgtttcttgatt |
125 |
Q |
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| T |
23617547 |
tatcagcagaaactgaaacaatagaagacacctggtcagttgatttcccttccaatatgccagttggatgcagaggaaacaaatccaatgtttcttgatt |
23617448 |
T |
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| Q |
126 |
actgtaaccaaagtcataattagggttagggattctctgttgcatgttttcattatataccattggactattgcagatatttgacatgccatttgagttt |
225 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23617447 |
actgtaaccaaagtcataattagggtttaggattctctgttgcatgttttcattatataccattggactattgcagatatttgacatgccatttgagttt |
23617348 |
T |
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| Q |
226 |
gacataactttctcagcatggttccttctataacctactgcaggtagaagcacttttggattttgagggtaatagcttatttcatgactttgtggttgtg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23617347 |
gacataactttctcagcatggttccttctataacctactgcaggtagaagcacttttggattttgagggtaatagcttatttcatgactttgtggttgtg |
23617248 |
T |
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| Q |
326 |
gtacgcagtatgatgcacgcatagctgaaaaccaaaaataatacttcaattaccaatgttacagtagaatactaggatgtaaagtaaggaaagaaat |
422 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
23617247 |
gtacgcaatatggtgcacgcatagctgaaaaccaaaaataataattcaattaccaatgttacagtacaatactaggatgtaaagtaaagaaagaaat |
23617151 |
T |
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