View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17400_low_4 (Length: 385)
Name: NF17400_low_4
Description: NF17400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17400_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 52376210 - 52375855
Alignment:
| Q |
13 |
atgaagcaagaatgataacaaagtaaaacaaaaaacctgagaatccaccatcaagccccacagcccaaaatgttatgcaggcaaaagcaagtgatagaaa |
112 |
Q |
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| T |
52376210 |
atgaagcaagaatgataacaaagtaaaacaaaaaacctgagaatccaccatcaagccccacagcccaaaatgttatgcaggcaaaagcaagtgatagaaa |
52376111 |
T |
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| Q |
113 |
caacaaagcaggcaaagcaacaatagcatgcgaaatcacgtaagaccatcttctgtaagcgttgtgagaggtttctctcatgaaaatgaaccgttcttga |
212 |
Q |
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| T |
52376110 |
caacaaagcaggcaaagcaacaatagcatgcgaaatcacgtaagaccatcttctgtaagcgttgtgagatgtttctctcatgaaaatgaaccgttcttga |
52376011 |
T |
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| Q |
213 |
atgaaaactggtagtgcatctgcagtggtgtagaaagtagttgacattgcaaaagcaaagaatccaagcctttcttgtacaccttttggactgttgtcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52376010 |
atgaaaactggtagtgcatctgcagtggtgtagaaagtagttgacattgcaaaagcaaagaatccaagcctttcttgtacaccttttggactgttgtcaa |
52375911 |
T |
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| Q |
313 |
gttgccaaaacattgttgcaagaatgaaaccagttaccataacagcgcccaatctt |
368 |
Q |
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| T |
52375910 |
gttgccaaaacattgttgcaagaatgaaaccagttaccataacagcgcccaatctt |
52375855 |
T |
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