View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17400_low_5 (Length: 363)
Name: NF17400_low_5
Description: NF17400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17400_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 42856193 - 42855853
Alignment:
| Q |
7 |
gcaacagagaagatagtgcaaagaaaaacttccttgttcgtatatcttgacataatcctcgtatgttttggtgctatgtaaagaagcaaattgaaattcc |
106 |
Q |
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| T |
42856193 |
gcaacagaaaagatagtgcaaagaaaaacttccttgttcgtatatcttgacataatcctcatatgttttggtgctatgtaaagaagcaaattgaaattcc |
42856094 |
T |
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| Q |
107 |
atttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattttaaacactgtttttaatatacatttcaaggat |
206 |
Q |
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| T |
42856093 |
ttttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattttaaacactgtttttaatatacatttcaaggat |
42855994 |
T |
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| Q |
207 |
aatactccttattctgtaccatgttttggagcagggtaggaagaaattgtcaaattgtcattgacgactaaacccttggtgccagatgtttgttaatgga |
306 |
Q |
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| T |
42855993 |
aatactccttattctgtaccatgttttggagcagggtaggaagaaattgtcaaattgtcattgacgactaaacccttggtgccagatgtttgttaatgga |
42855894 |
T |
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| Q |
307 |
cgtcattttttacaggtgtttgcacattttcaacatcaact |
347 |
Q |
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| T |
42855893 |
cgtcattttttacaggtgtttgcacattttcaacatcaact |
42855853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 218 - 347
Target Start/End: Complemental strand, 42857579 - 42857446
Alignment:
| Q |
218 |
ttctgtaccatgttttggagcagggtaggaagaaattgtcaaattgtcattgacgactaaacccttggtgccagatgtttgttaatggac----gtcatt |
313 |
Q |
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| T |
42857579 |
ttctgcaccatgtgttggagcacgggaggaagaaattgtcaaattgtgtttgacgactaaacccttggtgccagatgtttgtcaaaggacatcattcatt |
42857480 |
T |
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| Q |
314 |
ttttacaggtgtttgcacattttcaacatcaact |
347 |
Q |
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| T |
42857479 |
ttttacaggtgactgcacattttcaacatcaact |
42857446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 42862826 - 42862745
Alignment:
| Q |
94 |
aaattgaaattccatttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgatttt |
175 |
Q |
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| T |
42862826 |
aaatcgaaattccatgtgtcttgaatttttgctttgataagacaaaggcaaaaggagaaatggatgagaaaagcataatttt |
42862745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 42849196 - 42849129
Alignment:
| Q |
107 |
atttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattt |
174 |
Q |
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| T |
42849196 |
atttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgattt |
42849129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 42857670 - 42857614
Alignment:
| Q |
94 |
aaattgaaattccatttgtcttgaatttttgctatgataagacaaagccaaaaagaa |
150 |
Q |
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| T |
42857670 |
aaattgaaatttcatttgtcttgaatttttgctatgataaggaaaaggcaaaaagaa |
42857614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 42857796 - 42857709
Alignment:
| Q |
7 |
gcaacagagaagatagtgcaaagaaaaacttccttgttcgtatatcttgacataatcctcgtatgttttggtgctatgtaaagaagcaaat |
97 |
Q |
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| T |
42857796 |
gcaatagaaaagatactgcaaagaaaaacttccttattcatatatctcgacataattatc--atgttttggtgc-atgtaaagaagcaaat |
42857709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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