View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17400_low_6 (Length: 301)
Name: NF17400_low_6
Description: NF17400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17400_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 41980577 - 41980862
Alignment:
| Q |
2 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
101 |
Q |
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| T |
41980577 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
41980676 |
T |
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| Q |
102 |
aagaaatgaactttatatgattgctatatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagnnnnnnnagcgac |
201 |
Q |
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| T |
41980677 |
aagaaatgaactttatatgattgc--tatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagtttttttagcgac |
41980774 |
T |
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| Q |
202 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttgggatattgtcctacatatcatgatattattg |
289 |
Q |
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| T |
41980775 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttgggatattgtcctacatatcatgatattattg |
41980862 |
T |
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