View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_high_15 (Length: 286)
Name: NF17401_high_15
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 20998058 - 20998216
Alignment:
| Q |
21 |
aaacaaaaataaaggagaaatttctgcaatatatttatatatggtcttattgtttc-cagagtattgagaaattgcaatatcagtggaacattgcccgaa |
119 |
Q |
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| T |
20998058 |
aaacaaaaatagaggagaaatttc-gcaaaatatttatgtatggtcttgttggctcgcagagtattgagaagttgcaatatcagtggagcattgcccgaa |
20998156 |
T |
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| Q |
120 |
tatcttggaaagttaactaatctgaaagtgatgtaagtatagtcatacttcttttcattt |
179 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| |
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| T |
20998157 |
tatcttggaaagttaactaatctggaagtgatgtaagtatagttatgcttctttccattt |
20998216 |
T |
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Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 21013305 - 21013147
Alignment:
| Q |
21 |
aaacaaaaataaaggagaaatttctgcaatatatttatatatggtcttattgtttc-cagagtattgagaaattgcaatatcagtggaacattgcccgaa |
119 |
Q |
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||||||||||| |||||||||||| |||| |||||||| ||||||||| ||| || |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
21013305 |
aaacaaaaatagaggagaaatttc-gcaaaatatttatgtatggtcttgttggctcgcagagtattgagaagttgcaatatcagtggagcattgcccgaa |
21013207 |
T |
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| Q |
120 |
tatcttggaaagttaactaatctgaaagtgatgtaagtatagtcatacttcttttcattt |
179 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| |
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| T |
21013206 |
tatcttggaaagttaactaatctggaagtgatgtaagtatagttatgcttctttccattt |
21013147 |
T |
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