View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17401_high_20 (Length: 251)

Name: NF17401_high_20
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17401_high_20
NF17401_high_20
[»] chr1 (24 HSPs)
chr1 (53-235)||(34557580-34557762)
chr1 (53-98)||(33740784-33740829)
chr1 (54-106)||(10613675-10613727)
chr1 (54-112)||(40116773-40116831)
chr1 (54-112)||(50643451-50643509)
chr1 (59-112)||(6783699-6783752)
chr1 (59-112)||(7288112-7288165)
chr1 (53-98)||(10373756-10373801)
chr1 (53-98)||(35392699-35392744)
chr1 (1-98)||(45217627-45217720)
chr1 (53-98)||(52580469-52580514)
chr1 (2-38)||(34557785-34557821)
chr1 (53-104)||(26615633-26615684)
chr1 (59-98)||(28296776-28296815)
chr1 (1-39)||(15926729-15926767)
chr1 (1-39)||(16797304-16797342)
chr1 (54-112)||(17826035-17826092)
chr1 (53-98)||(8742471-8742516)
chr1 (59-112)||(12770293-12770346)
chr1 (59-112)||(48803752-48803805)
chr1 (59-112)||(52870135-52870188)
chr1 (59-107)||(18611724-18611772)
chr1 (54-94)||(32186155-32186194)
chr1 (60-112)||(43759764-43759816)
[»] chr5 (36 HSPs)
chr5 (54-168)||(14197764-14197878)
chr5 (115-187)||(6467428-6467500)
chr5 (184-235)||(14196410-14196461)
chr5 (53-98)||(40988734-40988779)
chr5 (54-106)||(26243943-26243995)
chr5 (54-112)||(6834709-6834767)
chr5 (65-107)||(6835207-6835249)
chr5 (59-112)||(1143871-1143924)
chr5 (53-98)||(25751923-25751968)
chr5 (53-98)||(26394743-26394788)
chr5 (53-98)||(29835922-29835967)
chr5 (53-98)||(38090543-38090588)
chr5 (59-112)||(41210062-41210115)
chr5 (53-106)||(42273082-42273135)
chr5 (54-104)||(3307133-3307183)
chr5 (53-98)||(4000454-4000500)
chr5 (72-110)||(6808567-6808605)
chr5 (60-98)||(13968655-13968693)
chr5 (53-107)||(21086087-21086141)
chr5 (54-104)||(21360735-21360785)
chr5 (1-39)||(33158980-33159018)
chr5 (53-98)||(36498683-36498729)
chr5 (60-98)||(38424794-38424832)
chr5 (54-112)||(42546669-42546727)
chr5 (54-107)||(11157169-11157222)
chr5 (65-106)||(11277342-11277383)
chr5 (65-98)||(33159040-33159073)
chr5 (59-104)||(38978258-38978303)
chr5 (53-98)||(39047518-39047563)
chr5 (59-112)||(41084822-41084875)
chr5 (60-104)||(3306659-3306703)
chr5 (54-106)||(6809315-6809367)
chr5 (54-90)||(11276774-11276810)
chr5 (54-98)||(13545255-13545299)
chr5 (65-105)||(34217139-34217179)
chr5 (60-104)||(38977784-38977828)
[»] chr7 (20 HSPs)
chr7 (54-112)||(9495022-9495080)
chr7 (53-98)||(21366459-21366504)
chr7 (53-98)||(28295118-28295163)
chr7 (54-105)||(24212527-24212578)
chr7 (53-98)||(12231335-12231380)
chr7 (53-98)||(33210479-33210524)
chr7 (53-98)||(38450027-38450072)
chr7 (53-98)||(40259782-40259827)
chr7 (59-112)||(44388231-44388284)
chr7 (54-106)||(4287150-4287202)
chr7 (54-106)||(31309227-31309279)
chr7 (61-112)||(35498845-35498896)
chr7 (53-98)||(37710755-37710801)
chr7 (54-88)||(42491296-42491330)
chr7 (53-98)||(28293587-28293632)
chr7 (54-91)||(31308458-31308495)
chr7 (65-98)||(33696720-33696753)
chr7 (60-104)||(21125509-21125553)
chr7 (54-98)||(21386598-21386642)
chr7 (54-98)||(29644795-29644839)
[»] chr3 (18 HSPs)
chr3 (53-104)||(2444599-2444650)
chr3 (53-98)||(29492216-29492261)
chr3 (54-106)||(54800284-54800336)
chr3 (54-105)||(9665706-9665757)
chr3 (53-98)||(4070354-4070399)
chr3 (53-98)||(37089674-37089719)
chr3 (54-94)||(50314261-50314301)
chr3 (59-98)||(43914548-43914587)
chr3 (1-39)||(29495087-29495125)
chr3 (54-112)||(33128632-33128690)
chr3 (53-98)||(1587046-1587091)
chr3 (59-104)||(4584228-4584273)
chr3 (65-98)||(33236980-33237013)
chr3 (53-98)||(33778449-33778494)
chr3 (53-98)||(38667329-38667374)
chr3 (53-98)||(45970579-45970624)
chr3 (54-107)||(54493479-54493532)
chr3 (69-105)||(9667142-9667178)
[»] chr2 (20 HSPs)
chr2 (54-105)||(7338674-7338725)
chr2 (53-98)||(18060353-18060398)
chr2 (54-112)||(21540524-21540582)
chr2 (53-98)||(5438235-5438280)
chr2 (53-98)||(10316015-10316060)
chr2 (59-112)||(28637925-28637978)
chr2 (54-98)||(10316380-10316424)
chr2 (54-98)||(10317062-10317106)
chr2 (54-104)||(1091182-1091232)
chr2 (60-98)||(9758961-9758999)
chr2 (60-98)||(10315658-10315696)
chr2 (53-98)||(6082145-6082190)
chr2 (59-112)||(7532472-7532525)
chr2 (59-112)||(17815688-17815741)
chr2 (59-112)||(22064129-22064182)
chr2 (65-98)||(27482126-27482159)
chr2 (54-107)||(41425636-41425689)
chr2 (65-98)||(43207079-43207112)
chr2 (60-104)||(1090724-1090768)
chr2 (60-104)||(12138711-12138755)
[»] chr4 (26 HSPs)
chr4 (54-112)||(15739508-15739566)
chr4 (54-112)||(29860153-29860211)
chr4 (59-112)||(47308682-47308735)
chr4 (54-98)||(40220694-40220738)
chr4 (59-112)||(1861948-1862001)
chr4 (59-112)||(34732774-34732827)
chr4 (53-98)||(36927637-36927682)
chr4 (53-98)||(38392243-38392288)
chr4 (59-112)||(40146215-40146268)
chr4 (53-98)||(42341914-42341959)
chr4 (59-112)||(56279992-56280045)
chr4 (60-104)||(23161324-23161368)
chr4 (54-94)||(43419798-43419838)
chr4 (65-112)||(6644247-6644294)
chr4 (54-92)||(22072711-22072749)
chr4 (60-98)||(54444756-54444794)
chr4 (53-98)||(1565777-1565822)
chr4 (53-94)||(12213236-12213277)
chr4 (53-98)||(36076750-36076795)
chr4 (69-106)||(43420599-43420636)
chr4 (59-112)||(48800234-48800287)
chr4 (59-107)||(6644747-6644794)
chr4 (54-98)||(12594794-12594838)
chr4 (54-98)||(35194236-35194280)
chr4 (60-104)||(36870322-36870366)
chr4 (60-104)||(36870796-36870840)
[»] scaffold0060 (1 HSPs)
scaffold0060 (59-112)||(66813-66866)
[»] chr8 (18 HSPs)
chr8 (59-112)||(17924724-17924777)
chr8 (59-112)||(20166522-20166575)
chr8 (53-98)||(30728961-30729006)
chr8 (53-98)||(41392748-41392793)
chr8 (65-98)||(41575148-41575181)
chr8 (59-112)||(44445381-44445434)
chr8 (54-106)||(23565834-23565886)
chr8 (54-106)||(33852795-33852847)
chr8 (54-93)||(41450154-41450193)
chr8 (1-39)||(31204040-31204078)
chr8 (53-98)||(31204089-31204135)
chr8 (54-104)||(39863570-39863620)
chr8 (53-98)||(4488690-4488735)
chr8 (59-112)||(40450054-40450107)
chr8 (53-98)||(42355733-42355778)
chr8 (54-94)||(9263790-9263830)
chr8 (60-104)||(37746521-37746565)
chr8 (54-94)||(44629154-44629194)
[»] chr6 (5 HSPs)
chr6 (53-98)||(1798730-1798775)
chr6 (53-98)||(29212970-29213015)
chr6 (59-112)||(34658375-34658428)
chr6 (65-98)||(32597058-32597091)
chr6 (54-106)||(23597239-23597291)
[»] scaffold0474 (1 HSPs)
scaffold0474 (60-98)||(12351-12389)
[»] scaffold0063 (1 HSPs)
scaffold0063 (54-112)||(34082-34140)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 34557762 - 34557580
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaacggtagcgatcgagggaatgaggaatttggatacaaataa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  34557762 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaactctagtgatcgagtgaatgaggaatttggatacaaataa 34557663  T
Q  153 ttttgcatgtgattgctacattgaagaaaataatttctgccacttttcctttaagggtgaaaatgatctgaaaatgaaggatg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34557662 ttttgcatgtgattgctacattgaagaaaataatttctgccacttttcctttaagggtgaaaatgatctgaaaatgaaggatg 34557580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 33740829 - 33740784
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33740829 tttatccttgattcaaaagatattaaaggcaaacaattaacaatta 33740784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 10613727 - 10613675
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  10613727 ttatacttgactcaaaagatattaaaggcaaacaatgaacagttagctttaat 10613675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 40116831 - 40116773
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||| ||||||||||||||| ||| |||||||| || ||||||||||| ||||    
T  40116831 ttatacttgactcaaaagatattaaaggcacacaattaaaaagtagctttaatatttaa 40116773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 50643509 - 50643451
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||| | ||||||||||||||| | |||||||||||| |||||||||||| ||||    
T  50643509 ttatacttcactcaaaagatattaaaggtaaacaattaacagttagctttaatatttaa 50643451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 6783752 - 6783699
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  6783752 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 6783699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 7288165 - 7288112
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  7288165 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 7288112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 10373756 - 10373801
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  10373756 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 10373801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 35392699 - 35392744
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  35392699 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 35392744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 45217720 - 45217627
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaattnnnnnnnnnnnnntttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||||||||||||||||||||||| |||| |||||||||             ||||| ||| | ||||||||||||||||||||||||||||||||||    
T  45217720 tttgcacttatgtgcaaaatgcccctaaacttgaaaatt----tatattttttttatccttaactcaaaagatattaaaagcaaacaattaacaatta 45217627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 52580514 - 52580469
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||    
T  52580514 tttatcctagattcaaaagatattaaaggcaaacaattaacaatta 52580469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 34557821 - 34557785
Alignment:
Q  2 ttgcacttatgtgcaaaatgcccttaaatttgaaaat 38  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34557821 ttgcacttatgtgcaaaatgcccttaaacttgaaaat 34557785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 26615684 - 26615633
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    ||||| ||||| ||||| || |||||| ||||||||||||||||||||||||    
T  26615684 tttatgcttgactcaaaggacattaaaggcaaacaattaacaattagcttta 26615633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 28296776 - 28296815
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  28296776 cttgattcaaaagatattaaagacaaacaattaacaatta 28296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15926767 - 15926729
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaatt 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  15926767 tttgcacttatgtgcaaaatgcccctaaacttgaaaatt 15926729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16797304 - 16797342
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaatt 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  16797304 tttgcacttatgtgcaaaatgcccctaaacttgaaaatt 16797342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 17826035 - 17826092
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||| ||| |||||||||||||| |  ||||||||||||||||||||||||| ||||    
T  17826035 ttatacgtgactcaaaagatattaagat-aaacaattaacaattagctttaatatttaa 17826092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 8742516 - 8742471
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||||||||||||  |||||||||||||||||    
T  8742516 tttatccttgactcaaaagatattaaagacaaacaattaacaatta 8742471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 12770293 - 12770346
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||| ||||||||  ||||||||||||| ||| |||||||| ||||    
T  12770293 cttgattcaaaatatattaaagacaaacaattaacatttaactttaatatttaa 12770346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 48803805 - 48803752
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||| ||  ||||||||||||| ||| |||||||| ||||    
T  48803805 cttgattcaaaagatattgaagacaaacaattaacagttaactttaatatttaa 48803752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 52870135 - 52870188
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||| ||||||||  ||||||||||||| ||| |||||||| ||||    
T  52870135 cttgattcaaaatatattaaagacaaacaattaacagttaactttaatatttaa 52870188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 18611772 - 18611724
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    ||||||||||||||||||||   ||||||||||||| ||| ||||||||    
T  18611772 cttgattcaaaagatattaaggacaaacaattaacagttaactttaata 18611724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 32186194 - 32186155
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  32186194 ttatccttgattcaaaagatatt-aaagcaaacaattaaca 32186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 43759764 - 43759816
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||| |||||||||||||||  |||||||||||| |||| |||||||| ||||    
T  43759764 ttgactcaaaagatattaaagacaaacaattaacgattatctttaatatttaa 43759816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 14197878 - 14197764
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaacggtagcgatcgagggaatgaggaatttggatacaaataat 153  Q
    |||||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||    
T  14197878 ttatacttgactcaaaaaatattaaaggcaaacaattaacagttagttttaataattaacggtagtgatcgagggaatgaggactttggatacaaatcat 14197779  T
Q  154 tttgcatgtgattgc 168  Q
    |||||||| ||||||    
T  14197778 tttgcatgggattgc 14197764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 6467500 - 6467428
Alignment:
Q  115 gtagcgatcgagggaatgaggaatttggatacaaataattttgcatgtgattgctacattgaagaaaataatt 187  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6467500 gtagtgatcgagggaatggggaatttggatacaaatcattttgcatgtgattgcaacattgaagaaaataatt 6467428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 14196461 - 14196410
Alignment:
Q  184 aatttctgccacttttcctttaagggtgaaaatgatctgaaaatgaaggatg 235  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  14196461 aatttctgccacttttcctataagggtgaaaatgatatgaaaatgaaggatg 14196410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 40988779 - 40988734
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  40988779 tttatccttgactcaaaagatattaaaagcaaacaattaacaatta 40988734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 26243995 - 26243943
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||| | ||||||||| ||||| ||||||||||||||||||||||||||    
T  26243995 ttatactttactcaaaagatcttaaaggcaaacaattaacaattagctttaat 26243943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 6834709 - 6834767
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||| |||||||| ||||    
T  6834709 ttatacttgactcaaaatatattaaaggcaaacaattaacagttaactttaatatttaa 6834767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 6835249 - 6835207
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  6835249 tcaaaagatattaaaggcaaacaattaacaattaactttaata 6835207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 1143871 - 1143924
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  1143871 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 1143924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 25751923 - 25751968
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  25751923 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 25751968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 26394788 - 26394743
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  26394788 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 26394743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 29835967 - 29835922
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  29835967 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 29835922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 38090543 - 38090588
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||    
T  38090543 tttatccttgattcaaaagatattaaaggcaaacaattaataatta 38090588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 41210115 - 41210062
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  41210115 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 41210062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 42273082 - 42273135
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||| |||||||||||    
T  42273082 tttatccttgactcaaaagatattaaaggcaaacaactaacagttagctttaat 42273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 3307183 - 3307133
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||| ||||| |||||||||  |||||||||||||||||||||||    
T  3307183 ttattcttgactcaaatgatattaaagacaaacaattaacaattagcttta 3307133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4000500 - 4000454
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaac-aattaacaatta 98  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  4000500 tttatgcttgactcaaaagatattaaaagcaaacaaattaacaatta 4000454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 6808567 - 6808605
Alignment:
Q  72 atattaaaagcaaacaattaacaattagctttaataatt 110  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  6808567 atatcaaaagcaaacaattaacaattaactttaataatt 6808605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 13968693 - 13968655
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  13968693 ttgactcaaaagatattaaaggcaaacaattaacaatta 13968655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 21086141 - 21086087
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    ||||||||||| |||||||||||||||  ||||||||||||| |||  |||||||    
T  21086141 tttatacttgactcaaaagatattaaagacaaacaattaacagttaattttaata 21086087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 21360735 - 21360785
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||||| ||| ||||||||||||||| |||||||||||||| ||| |||||    
T  21360735 ttatacctgactcaaaagatattaaaggcaaacaattaacacttaacttta 21360785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33158980 - 33159018
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaatt 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  33158980 tttgcacttatgtgcaaaatgcccctaaacttgaaaatt 33159018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 36498683 - 36498729
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaac-aattaacaatta 98  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  36498683 tttatgcttgactcaaaagatattaaaagcaaacaaattaacaatta 36498729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 38424832 - 38424794
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  38424832 ttgactcaaaagatattaaaggcaaacaattaacaatta 38424794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 42546669 - 42546727
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    ||||| |||| |||||| ||||||||| ||||||||||||| ||| |||||||| ||||    
T  42546669 ttatatttgactcaaaaaatattaaaaacaaacaattaacagttacctttaatatttaa 42546727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 11157169 - 11157222
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    ||||| |||| ||||||||||||||||||| |||||||||| |||  |||||||    
T  11157169 ttatatttgactcaaaagatattaaaagcagacaattaacagttaattttaata 11157222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 11277383 - 11277342
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    ||||||||||||||| |||||||||||||  |||||||||||    
T  11277383 tcaaaagatattaaaggcaaacaattaacggttagctttaat 11277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 33159040 - 33159073
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  33159040 tcaaaagatattaaaggcaaacaattaacaatta 33159073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 38978303 - 38978258
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    ||||| ||||| |||||||||  |||||||||||||||||||||||    
T  38978303 cttgactcaaatgatattaaagacaaacaattaacaattagcttta 38978258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 39047518 - 39047563
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| |||||  |||||||||||||| ||||||||||||||||||    
T  39047518 tttatccttgacccaaaagatattaaaggcaaacaattaacaatta 39047563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 41084822 - 41084875
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    ||||||| |||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  41084822 cttgatttaaaagatattaaagacaaacaattaacagttaactttaatatttaa 41084875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 3306659 - 3306703
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||    
T  3306659 ttgactcaaaagatattaaaggcaagcaattaacatttagcttta 3306703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 6809367 - 6809315
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| |||||||||||||||   |||||||||||| | |||||||||    
T  6809367 ttatacttgactcaaaagatattaaagataaacaattaacagtaagctttaat 6809315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 11276774 - 11276810
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaatt 90  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  11276774 ttatacttgactcaaaagatattaaaggcaaacaatt 11276810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 13545299 - 13545255
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| |||||||||||||||  |||||||||||||||||    
T  13545299 ttatccttgactcaaaagatattaaagacaaacaattaacaatta 13545255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 34217179 - 34217139
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaattagctttaa 105  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  34217179 tcaaaagatattaaaggcaaccaattaacagttagctttaa 34217139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 38977784 - 38977828
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| |||||||||||||||  ||||||||||||| |||||||||    
T  38977784 ttgactcaaaagatattaaacacaaacaattaacatttagcttta 38977828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 9495022 - 9495080
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9495022 ttatactttactcaaaagatattaaaggcaaacaattaacaattagctttaatatttaa 9495080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 21366459 - 21366504
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  21366459 tttatccttgattcaaaagatattaaaagcaaacaattaacaatta 21366504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 28295163 - 28295118
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  28295163 tttattcttgactcaaaagatattaaaagcaaacaattaacaatta 28295118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 24212527 - 24212578
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaa 105  Q
    |||||||||| ||||||||||||||| |||||||||||||  ||||||||||    
T  24212527 ttatacttgactcaaaagatattaaaggcaaacaattaaccgttagctttaa 24212578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 12231335 - 12231380
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  12231335 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 12231380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 33210479 - 33210524
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  33210479 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 33210524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 38450027 - 38450072
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  38450027 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 38450072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 40259782 - 40259827
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  40259782 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 40259827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 44388284 - 44388231
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  44388284 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 44388231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 4287150 - 4287202
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    ||||| |||| ||||||||||||||| ||||||| |||||| |||||||||||    
T  4287150 ttatagttgactcaaaagatattaaaggcaaacacttaacagttagctttaat 4287202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 31309279 - 31309227
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    ||||||| || ||||||||||||||| |||||||||||||| |||| ||||||    
T  31309279 ttatactcgactcaaaagatattaaaggcaaacaattaacagttagttttaat 31309227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 35498845 - 35498896
Alignment:
Q  61 tgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  35498845 tgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 35498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37710755 - 37710801
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaac-aattaacaatta 98  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  37710755 tttatgcttgactcaaaagatattaaaagcaaacaaattaacaatta 37710801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 42491330 - 42491296
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaa 88  Q
    |||||||||||||||||||||||||| ||||||||    
T  42491330 ttatacttgattcaaaagatattaaaggcaaacaa 42491296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 28293587 - 28293632
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| |||||||||| |||||||    
T  28293587 tttatccttgactcaaaagatattaaaggcaaacaattgacaatta 28293632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 31308458 - 31308495
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaatta 91  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31308458 ttatacttgacacaaaagatattaaaagcaaacaatta 31308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 33696720 - 33696753
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  33696720 tcaaaagatattaaaggcaaacaattaacaatta 33696753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 21125553 - 21125509
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||    
T  21125553 ttgactcaaaagatattaaaggcaagcaattaacatttagcttta 21125509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 21386598 - 21386642
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| ||||||||||||||| | ||||||||||||||||    
T  21386598 ttatccttgactcaaaagatattaaaggtaaacaattaacaatta 21386642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 29644839 - 29644795
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| |||||||||||||||  |||||||||||||||||    
T  29644839 ttatccttgactcaaaagatattaaagccaaacaattaacaatta 29644795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 2444599 - 2444650
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  2444599 tttatacttgactcaaaagatattaaaggcaaacaattaacagttagcttta 2444650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 29492216 - 29492261
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  29492216 tttatccttgattcaaaagatattaaaggcaaacaattaacaatta 29492261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 54800284 - 54800336
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  54800284 ttatacttgactcaaaaaatattaaaggcaaacaattaacatttagctttaat 54800336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 9665706 - 9665757
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaa 105  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  9665706 ttatccttgactcaaaagatattaaaagcaaaccattaacaattaactttaa 9665757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4070399 - 4070354
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  4070399 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 4070354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37089674 - 37089719
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  37089674 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 37089719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 50314301 - 50314261
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  50314301 ttatacttgactcaaaagatattaaaggcaaacaattaaca 50314261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 43914587 - 43914548
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  43914587 cttgactcaaaagatattaaaggcaaacaattaacaatta 43914548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29495125 - 29495087
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaatt 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  29495125 tttgcacttatgtgcaaaatgcccctaaatttaaaaatt 29495087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 33128632 - 33128690
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    ||||| |||| |||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  33128632 ttatatttgactcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 33128690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 1587046 - 1587091
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  1587046 tttatccttgactcaaaaaatattaaaggcaaacaattaacaatta 1587091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 4584228 - 4584273
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||    
T  4584228 cttgattcaaaagatattaaagacaaacaattaacagttaacttta 4584273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 33236980 - 33237013
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  33236980 tcaaaagatattaaaggcaaacaattaacaatta 33237013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 33778494 - 33778449
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  33778494 tttatccttgactcgaaagatattaaaggcaaacaattaacaatta 33778449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 38667329 - 38667374
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  38667329 tttatccttgactcgaaagatattaaaggcaaacaattaacaatta 38667374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 45970624 - 45970579
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  45970624 tttatccttgactcaaaaaatattaaaggcaaacaattaacaatta 45970579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 54493532 - 54493479
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    |||| ||||| |||||| |||||||| |||||||||||||| ||| ||||||||    
T  54493532 ttatccttgactcaaaatatattaaaggcaaacaattaacatttaactttaata 54493479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 9667178 - 9667142
Alignment:
Q  69 aagatattaaaagcaaacaattaacaattagctttaa 105  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  9667178 aagatattaaaggcaaacaattaacaattaactttaa 9667142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 7338725 - 7338674
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaa 105  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  7338725 ttatacttgactcaaaagatattaaaggcaaacaattaaccattagctttaa 7338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 18060398 - 18060353
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  18060398 tttatccttgactcaaaagatattaaaagcaaacaattaacaatta 18060353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 21540524 - 21540582
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||| ||||||||||||| | | |||||||||||| |||||||||||| ||||    
T  21540524 ttatacttgactcaaaagatattacagggaaacaattaacagttagctttaatatttaa 21540582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 5438235 - 5438280
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  5438235 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 5438280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 10316015 - 10316060
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  10316015 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 10316060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 28637978 - 28637925
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  28637978 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 28637925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 10316380 - 10316424
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||    
T  10316380 ttatccttgactcaaaagatattaaaggcaaacaattaacaatta 10316424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 10317062 - 10317106
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||    
T  10317062 ttatccttgactcaaaagatattaaaggcaaacaattaacaatta 10317106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 1091232 - 1091182
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||| ||||| |||||||||  |||||||||||||||||||||||    
T  1091232 ttatccttgactcaaatgatattaaagacaaacaattaacaattagcttta 1091182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 9758999 - 9758961
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  9758999 ttgactcaaaagatattaaaggcaaacaattaacaatta 9758961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 10315658 - 10315696
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  10315658 ttgactcaaaagatattaaaggcaaacaattaacaatta 10315696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 6082190 - 6082145
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||    
T  6082190 tttatccttgatccaaaagatattaaaggcaaacaattaataatta 6082145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 7532525 - 7532472
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||| |||| ||||    
T  7532525 cttgattcaaaagatattaaagacaaacaattaacagttaacttcaatatttaa 7532472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 17815688 - 17815741
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||| | ||| |||||||| ||||    
T  17815688 cttgattcaaaagatattaaagacaaacaattaatagttaactttaatatttaa 17815741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 22064129 - 22064182
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    ||||||||||||| |||||||  ||||||||||||| ||| |||||||| ||||    
T  22064129 cttgattcaaaagttattaaagacaaacaattaacagttaactttaatatttaa 22064182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 27482159 - 27482126
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  27482159 tcaaaagatattaaaggcaaacaattaacaatta 27482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 41425636 - 41425689
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    |||| ||||||||||||||||||||| ||||||||| |||  ||| ||||||||    
T  41425636 ttatccttgattcaaaagatattaaaggcaaacaatcaacggttaactttaata 41425689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 43207079 - 43207112
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  43207079 tcaaaagatattaaaggcaaacaattaacaatta 43207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 1090724 - 1090768
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||    
T  1090724 ttgactcaaaagatattaaaggcaagcaattaacatttagcttta 1090768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 12138711 - 12138755
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||    
T  12138711 ttgactcaaaagatattaaaggcaagcaattaacatttagcttta 12138755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 15739566 - 15739508
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||| |||||| |||||||| |||||||||||||| |||||||||||| ||||    
T  15739566 ttatacttgactcaaaaaatattaaaggcaaacaattaacagttagctttaatatttaa 15739508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 29860153 - 29860211
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||| ||||||||||||||| |||||||||||| | |||||||||||| ||||    
T  29860153 ttatacttgactcaaaagatattaaatgcaaacaattaatagttagctttaatatttaa 29860211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 47308682 - 47308735
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||||||||    
T  47308682 cttgattcaaaagatattaaagacaaacaattaacagttaactttaataattaa 47308735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 40220738 - 40220694
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  40220738 ttatacttgactcaaaagatattaaaggcaaacaattaacaatta 40220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 1862001 - 1861948
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  1862001 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 1861948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 34732774 - 34732827
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  34732774 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 34732827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 36927637 - 36927682
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  36927637 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 36927682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 38392243 - 38392288
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||    
T  38392243 tttatcctagattcaaaagatattaaaggcaaacaattaacaatta 38392288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 40146268 - 40146215
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  40146268 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 40146215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 42341914 - 42341959
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  42341914 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 42341959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 56279992 - 56280045
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  56279992 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 56280045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 23161324 - 23161368
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||    
T  23161324 ttgactcaaaagatattaaaggcaaacaattaacatttagcttta 23161368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 43419798 - 43419838
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  43419798 ttatacttgactcaaaagatattaaaggcaaacaattaaca 43419838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 6644247 - 6644294
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  6644247 tcaaaatatattaaaagcaaataattaacagttagctttaatatttaa 6644294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 22072749 - 22072711
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaa 92  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  22072749 ttatacttgactcaaaagatattaaaagcaaacatttaa 22072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 54444756 - 54444794
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  54444756 ttgactcaaaagatattaaaggcaaacaattaacaatta 54444794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 1565822 - 1565777
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  1565822 tttatccttgactcaaaaaatattaaaggcaaacaattaacaatta 1565777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 12213277 - 12213236
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    ||||||||||| |||||||||||||||  |||||||||||||    
T  12213277 tttatacttgactcaaaagatattaaagacaaacaattaaca 12213236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 36076750 - 36076795
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  36076750 tttatccttgactcaaaatatattaaaggcaaacaattaacaatta 36076795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 43420636 - 43420599
Alignment:
Q  69 aagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||||||||||||||||||| || ||||||||    
T  43420636 aagatattaaaagcaaacaattaacatttggctttaat 43420599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 48800287 - 48800234
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||  ||| |||||||| ||||    
T  48800287 cttgattcaaaagatattaaagacaaacaattaacggttaactttaatatttaa 48800234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 6644794 - 6644747
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaata 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||  |||||||    
T  6644794 cttgactcaaaagatattaaa-gcaaacaattaacaattaattttaata 6644747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 12594794 - 12594838
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| ||||||||||||||| ||| ||||||||||||||    
T  12594794 ttatccttgactcaaaagatattaaaggcagacaattaacaatta 12594838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 35194236 - 35194280
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||| |||||| |||||||| ||||||||||||||||||    
T  35194236 ttatccttgactcaaaatatattaaaggcaaacaattaacaatta 35194280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 36870322 - 36870366
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||| |||||||||  |||||||||||||||||||||||    
T  36870322 ttgactcaaatgatattaaagacaaacaattaacaattagcttta 36870366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 36870840 - 36870796
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| |||||||||||||||  ||||||||||||| |||||||||    
T  36870840 ttgactcaaaagatattaaagacaaacaattaacatttagcttta 36870796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 66813 - 66866
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  66813 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 66866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 17924724 - 17924777
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  17924724 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 17924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 20166575 - 20166522
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||| ||||| |||||||| ||||    
T  20166575 cttgattcaaaagatattaaagacaaacaattaaaaattaactttaatatttaa 20166522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 30729006 - 30728961
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||    
T  30729006 tttatcctagattcaaaagatattaaaggcaaacaattaacaatta 30728961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 41392748 - 41392793
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  41392748 tttatccttgactcaaaagatattaaatgcaaacaattaacaatta 41392793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 41575148 - 41575181
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||||||||||||||||||||||    
T  41575148 tcaaaagatattaaaagcaaacaattaacaatta 41575181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 44445434 - 44445381
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  44445434 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 44445381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 23565886 - 23565834
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| ||||||||||||||| |||||||||||||  ||||| |||||    
T  23565886 ttatacttgactcaaaagatattaaaggcaaacaattaacggttagccttaat 23565834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 33852847 - 33852795
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| |||||||||||||||  ||||||||||||| ||| |||||||    
T  33852847 ttatacttgactcaaaagatattaaagacaaacaattaacagttaactttaat 33852795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 41450154 - 41450193
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaac 93  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  41450154 ttattcttgattcaaaagatattaaaggcaaacaattaac 41450193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31204040 - 31204078
Alignment:
Q  1 tttgcacttatgtgcaaaatgcccttaaatttgaaaatt 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  31204040 tttgcacttatgtgcaaaatgcccctaaacttgaaaatt 31204078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 31204089 - 31204135
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaac-aattaacaatta 98  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  31204089 tttatccttgattcaaaagatattaaaggcaaacaaattaacaatta 31204135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 39863570 - 39863620
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| ||||| ||||| |||||||||  |||||||||||||||||||||||    
T  39863570 ttatccttgactcaaatgatattaaagacaaacaattaacaattagcttta 39863620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4488735 - 4488690
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| |||||||||||| |||||    
T  4488735 tttatccttgactcaaaagatattaaaggcaaacaattaataatta 4488690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 40450054 - 40450107
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||| |||| ||||    
T  40450054 cttgattcaaaagatattaaagacaaacaattaacagttaacttaaatatttaa 40450107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 42355733 - 42355778
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| |||||||||||||||  |||||||||||||||||    
T  42355733 tttatccttgactcaaaagatattaaagacaaacaattaacaatta 42355778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 9263830 - 9263790
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    ||||| ||||||||||||||||||||  |||||||||||||    
T  9263830 ttatatttgattcaaaagatattaaagacaaacaattaaca 9263790  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 37746521 - 37746565
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaattagcttta 104  Q
    |||| |||||||||||||||  ||||||||||||| |||||||||    
T  37746521 ttgactcaaaagatattaaagccaaacaattaacatttagcttta 37746565  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 44629154 - 44629194
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaaca 94  Q
    |||||||||| ||||||||||||||||  ||||||||||||    
T  44629154 ttatacttgactcaaaagatattaaaaataaacaattaaca 44629194  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 1798730 - 1798775
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  1798730 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 1798775  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 29212970 - 29213015
Alignment:
Q  53 tttatacttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  29212970 tttatccttgactcaaaagatattaaaggcaaacaattaacaatta 29213015  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 34658428 - 34658375
Alignment:
Q  59 cttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||    
T  34658428 cttgattcaaaagatattaaagacaaacaattaacagttaactttaatatttaa 34658375  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 32597091 - 32597058
Alignment:
Q  65 tcaaaagatattaaaagcaaacaattaacaatta 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  32597091 tcaaaagatattaaaggcaaacaattaacaatta 32597058  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 23597239 - 23597291
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaat 106  Q
    |||||||||| |||||||||||||||  ||||||||||||   ||||||||||    
T  23597239 ttatacttgactcaaaagatattaaagacaaacaattaactggtagctttaat 23597291  T

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Target: scaffold0474 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 12351 - 12389
Alignment:
Q  60 ttgattcaaaagatattaaaagcaaacaattaacaatta 98  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  12351 ttgactcaaaagatattaaaggcaaacaattaacaatta 12389  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 34140 - 34082
Alignment:
Q  54 ttatacttgattcaaaagatattaaaagcaaacaattaacaattagctttaataattaa 112  Q
    |||||||| | || |||||||||||| |||||||||||||| |||| ||||||| ||||    
T  34140 ttatacttcactcgaaagatattaaaggcaaacaattaacagttagttttaatatttaa 34082  T

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