View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_high_4 (Length: 461)
Name: NF17401_high_4
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 17937372 - 17937830
Alignment:
| Q |
17 |
aaaaaatttcaagttactaggaagagttgggtaacgtgcatgtatgattttggaaaacacaaagtaggaaaaatacaaagtatgtgccatgatattgaat |
116 |
Q |
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| T |
17937372 |
aaaaaatttcaagttactaggaagagttgggtaacgtgcatgtatgattttggaaaacacaaagtaggaaaaatacaaagtatgtgccatgatattgaat |
17937471 |
T |
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| Q |
117 |
aaaataatgaattgatgattgattacctgtaaggtagcaaa----------acagcaaacagaggtctctctctagtgagagatagagaccactgtgaga |
206 |
Q |
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| T |
17937472 |
aaaataatgaattgatgattgattacctgtaaggtagcaaagcaaagcaaaacagcaaacagaggtctctctctagtgagagatagagaccactgtgaga |
17937571 |
T |
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| Q |
207 |
gtgcaaatagcaaagcaagaggg---------------taatatttgtatatagttttgagttgagagaagtggaatggtttgtgatgggaatgcaggat |
291 |
Q |
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| T |
17937572 |
gtgcaaatagcaaagcaagagggagatatatgagaatgtaatatttgtatatagtt--gagttgagagaagtggaatggtttgtgatgggaatgcaggat |
17937669 |
T |
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| Q |
292 |
gggggagaatgaagagggtatttgtagggtgctaaaagctttaaagaaccgtgttcagtggaccccttttatgcaccatgataatgacccactttattgc |
391 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17937670 |
gggggagaatgaagagggtatttgtagggagctaaaagctttaaagaaccgtgttcagtggaccccttttatgcaccatgataatgacccactttattgc |
17937769 |
T |
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| Q |
392 |
attacaggtttttattttatttatttcaattcttttccacataaaaaattactagtattat |
452 |
Q |
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| T |
17937770 |
attacaggtttttattttatttatttcaattcttttccacataaaaaattactagtattat |
17937830 |
T |
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