View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17401_high_6 (Length: 434)
Name: NF17401_high_6
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_high_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 253 - 434
Target Start/End: Complemental strand, 5593343 - 5593162
Alignment:
| Q |
253 |
cacagttattccaacaacaatgagaagaaaaaccaatatcaatatgctacatgcttattgatcttctcttcacaattcacactctctctaactcacattg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593343 |
cacagttattccaacaacaatgagaagaaaaaccaatatcaatatgctacatgcttattgatcttctcttcacaattcacactctctctaactcacattg |
5593244 |
T |
|
| Q |
353 |
nnnnnnnnnnnnnnnnnaaaattccgtatctgatccaagaacctcgaactcgcattttctgtgtgaagtgattttgcttctt |
434 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5593243 |
tttttatttttatttttaaaatttggtatctgatccaagaacctcgcactcgcattgtctgtgtaaagtgattttgcttctt |
5593162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5593595 - 5593397
Alignment:
| Q |
1 |
agaacataactaactgctgtgnnnnnnncgggtaggggcaattgaggaaagaaagtggtaaaagagtaagagcacgcaaccatctgtgaaagtacattaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593595 |
agaacataactaactgctgtgaaaaaaacgggtaggggcaattgaggaaagaaagtggtaaaagagtaagagcacgcaaccatctgtgaaagtacattaa |
5593496 |
T |
|
| Q |
101 |
cattacagtgaagccnnnnnnnnnnnnnnnnnnnnnnnnntaatataatagtggttgttgtccttacagttagttccttaaattttatttccataatta |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5593495 |
cattacagtgaagccaaagaaaagtaaaaagaaaaaaaaataatataatagtggttgttgtccttacagttagttccataaattttatttccataatta |
5593397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University