View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_1 (Length: 651)
Name: NF17401_low_1
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 46 - 639
Target Start/End: Original strand, 46524826 - 46525414
Alignment:
| Q |
46 |
cacagttaacatcacacattaaccaaagaaacagtgatcagggaaattcggctgtactgcaccgtcaatataaacaaattaatgcctcttaacgtccatt |
145 |
Q |
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| T |
46524826 |
cacagttaacatcacacattaaccaaagaaacagtgatcagggaaattcggctgtactgcaccgtcaatataaacaaattaatgcctcttaacgtccatt |
46524925 |
T |
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| Q |
146 |
caaatattgttnnnnnnnnnnnnnnnnnncgtccattcaaataacaacactattaactctcgttttaccaatattcattcatttaatttaacaacaatat |
245 |
Q |
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| T |
46524926 |
caaatattgtcaaaaaaaaaaaaaaaaaa-gtccattcaaataacaacactattaactctcgttttaccaatattcattcatt-aatttaacaacaatat |
46525023 |
T |
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| Q |
246 |
tatcatgcaaatgtgcctcaaataattcacatgggttgtgtgaagcaagtgaaagggacatgacacttgattgttctttgtgtattttgtaactatccca |
345 |
Q |
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| T |
46525024 |
tatcatgcaaatgtgcctcaaataattcacatgggttgtgtgaagcaagtgaaagggacatgacacttgattgttctttgtgtattttgtaactatccca |
46525123 |
T |
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| Q |
346 |
tatagttgaaaaacgttaccattttcatttattcttagttccctaatattatcccatccaaaagacaaaaaacaaagacaagagatccaaaatccaattt |
445 |
Q |
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| T |
46525124 |
tatagttgaaaaacgttaccattttcatttattcttagttccctaatattatcccatccaaaagacaaaaaacaaagacaagagatccaaaatccaattt |
46525223 |
T |
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| Q |
446 |
tgnnnnnnngaggccaaccaaatatagcatagtttcttagacattaccagtgacatttggcattaggcatatggtgcaagttgtttcatgcaacaatgta |
545 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46525224 |
tgtttttttgaggccaaccaaatatagcatagtttcttagacattaccagtgacatttggcattaggcatatggtgcaagttgtttcatg---caatgta |
46525320 |
T |
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| Q |
546 |
ttgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttgtttcactatgctggctagttgttgtttgcctcttgtctctgct |
639 |
Q |
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| T |
46525321 |
ttgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttgtttcactatgctggctagttgttgtttgcctcttgtctctgct |
46525414 |
T |
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