View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_10 (Length: 360)
Name: NF17401_low_10
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 44 - 348
Target Start/End: Original strand, 5592799 - 5593103
Alignment:
| Q |
44 |
gctataagcgcttaattaagctgattttccaaacatgacctcaaaatatcccaatcaaaatgacnnnnnnngttaacatccaaatcaagtaagcatcatc |
143 |
Q |
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| T |
5592799 |
gctataagcgcttaattaagctgattttccaaacatgacctcaaaatatcccaatcaaaatgacaaaaaaagttaacatccaaatcaagtaagcatcatc |
5592898 |
T |
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| Q |
144 |
agatcacaaaaaacaattccatatggagaatcaatcttcttcaattacgcaatcaatcatggatccagatctcccttagattcaccaatcaaaatctata |
243 |
Q |
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| T |
5592899 |
agatcacaaaaaacaattccatatggagaatcaatcttcttcaattacgcaatcaatcaaggatccagatctcccttagattcaccaatcaaaatctata |
5592998 |
T |
|
| Q |
244 |
tcaaaagcataatcgtcatcacattgttgagagaaaatgcacctgaggcttcccagaaactacagttacacaatctttacaaccttgaagcttctcatca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5592999 |
tcaaaagcataatcgtcatcacattgttgagagaaaatgcacctgaggcttcccagaaacaacagttacacaatctttacaaccttgaagcttctcatca |
5593098 |
T |
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| Q |
344 |
ttgat |
348 |
Q |
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||||| |
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| T |
5593099 |
ttgat |
5593103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 29794073 - 29794109
Alignment:
| Q |
40 |
ttatgctataagcgcttaattaagctgattttccaaa |
76 |
Q |
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| T |
29794073 |
ttatgctataagcgcttaattaagctgtttatccaaa |
29794109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 47078603 - 47078541
Alignment:
| Q |
280 |
atgcacctgaggcttcccagaaactacagttacacaatctttacaaccttgaagcttctcatc |
342 |
Q |
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|||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||| |
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| T |
47078603 |
atgcacctgaggcttcccagcaacgacggttacacaatctttgcatccttgaagcttctcatc |
47078541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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