View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_11 (Length: 341)
Name: NF17401_low_11
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 25883547 - 25883854
Alignment:
| Q |
15 |
atcattactagttttatcacttgtttctgccatcttcattgaggattcatgagcctccagaagtgcaccaaaatctagacctgctttgagaagttcatca |
114 |
Q |
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| T |
25883547 |
atcattactagttttatcacttgtttctgccatcttcattgaggattcatgagcctccagaagtgcaccaaaatctagacctgctttgagaagttcatca |
25883646 |
T |
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| Q |
115 |
tactttccactttgcactactctcccttcacgcatcacctttaaagttggtgtcgacatgttagtatagctggctttagaggagcgaaatccaatagaga |
214 |
Q |
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| T |
25883647 |
tactttccactttgcactactctcccttcacgcatcacctttaaagttggtgtcagcatgttagtatagctggatttagaggagcgaaatcccatagaga |
25883746 |
T |
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| Q |
215 |
aataggaaaaattatgtatatgtaagtaaataatgcaatttgttttttggtgaacgcatgacagaatacatagtttaacctttgaataagacctactaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25883747 |
aataggaaaaattatgtatatgtaagtaaataatgcagtttgttttttggtgaacgcatgacagaatacatagtataacctttgaataagacctactaca |
25883846 |
T |
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| Q |
315 |
tgaagagt |
322 |
Q |
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|||||||| |
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| T |
25883847 |
tgaagagt |
25883854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 14318134 - 14318277
Alignment:
| Q |
22 |
ctagttttatcacttgtttctgccatcttcattgaggattcatgagcctccagaagtgcaccaaaatctagacctgctttgagaagttcatcatactttc |
121 |
Q |
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| T |
14318134 |
ctagttttatcacttgtttctgcaatttccattgaggattcatgagctgccacaagtgcaccaaaatctagacctgctttgagaagttcatcatactttc |
14318233 |
T |
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| Q |
122 |
cactttgcactactctcccttcacgcatcacctttaaagttggt |
165 |
Q |
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| T |
14318234 |
cactttgtactactctcccttcacgcatcacctttaaagttggt |
14318277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 14301704 - 14301854
Alignment:
| Q |
15 |
atcattactagttttatcacttgtttctgccatcttcattgaggattcatgagcctccagaagtgcaccaaaatctagacctgctttgagaagttcatca |
114 |
Q |
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||||| ||||||||| |||||||||||||| || | |||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||| |
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| T |
14301704 |
atcatcactagttttctcacttgtttctgctatttccattgaggattcatgagcagctacaagtgcaccaaaatctaggcctgctttgagaagttcatca |
14301803 |
T |
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| Q |
115 |
tactttccactttgcactactctcccttcacgcatcacctttaaagttggt |
165 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || ||||| |
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| T |
14301804 |
tactttccactttgcactactctcccttctcgcatcacctttgaaattggt |
14301854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 14279956 - 14280091
Alignment:
| Q |
30 |
atcacttgtttctgccatcttcattgaggattcatgagcctccagaagtgcaccaaaatctagacctgctttgagaagttcatcatactttccactttgc |
129 |
Q |
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||||||||||| ||| || | ||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14279956 |
atcacttgtttgtgcaatttccatcgaggattcatgagctgccacgagtgcaccaaaatctaggcctgctttgagaagttcatcatactttccactttgc |
14280055 |
T |
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| Q |
130 |
actactctcccttcacgcatcacctttaaagttggt |
165 |
Q |
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|||||||||||||| |||||||||||| || ||||| |
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| T |
14280056 |
actactctcccttctcgcatcacctttgaaattggt |
14280091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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