View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17401_low_12 (Length: 339)

Name: NF17401_low_12
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17401_low_12
NF17401_low_12
[»] chr6 (11 HSPs)
chr6 (19-328)||(6921189-6921498)
chr6 (19-290)||(6942806-6943077)
chr6 (19-307)||(6954358-6954646)
chr6 (20-328)||(6935073-6935366)
chr6 (60-328)||(6947760-6948028)
chr6 (180-306)||(20770594-20770720)
chr6 (170-239)||(17369675-17369744)
chr6 (19-88)||(6947671-6947740)
chr6 (184-254)||(14749393-14749463)
chr6 (182-260)||(24254428-24254506)
chr6 (186-250)||(24950150-24950214)
[»] chr7 (52 HSPs)
chr7 (19-328)||(1985794-1986103)
chr7 (170-303)||(18514777-18514910)
chr7 (180-305)||(13416911-13417036)
chr7 (170-251)||(14076677-14076758)
chr7 (170-251)||(14386705-14386786)
chr7 (170-303)||(15571885-15572018)
chr7 (168-298)||(19344563-19344693)
chr7 (180-249)||(660847-660916)
chr7 (181-276)||(19604464-19604559)
chr7 (187-260)||(22021382-22021455)
chr7 (180-288)||(6864807-6864914)
chr7 (181-265)||(29867221-29867305)
chr7 (182-256)||(22028622-22028696)
chr7 (180-250)||(29454103-29454173)
chr7 (181-239)||(29881267-29881325)
chr7 (182-250)||(12819918-12819986)
chr7 (182-254)||(19351071-19351143)
chr7 (180-276)||(20058057-20058153)
chr7 (180-256)||(20352089-20352165)
chr7 (180-256)||(22063636-22063712)
chr7 (180-276)||(22100467-22100563)
chr7 (180-244)||(29874517-29874581)
chr7 (167-250)||(29921980-29922063)
chr7 (203-260)||(9807814-9807871)
chr7 (181-254)||(18952906-18952979)
chr7 (181-254)||(18982953-18983026)
chr7 (181-254)||(18997599-18997672)
chr7 (181-257)||(20338917-20338993)
chr7 (172-251)||(22070110-22070189)
chr7 (184-275)||(36263028-36263119)
chr7 (182-260)||(19325987-19326065)
chr7 (180-250)||(19637217-19637287)
chr7 (170-256)||(20374493-20374579)
chr7 (180-250)||(29859454-29859524)
chr7 (181-250)||(29106814-29106883)
chr7 (180-265)||(29431001-29431086)
chr7 (187-256)||(29445663-29445732)
chr7 (196-292)||(15443922-15444018)
chr7 (182-254)||(19357906-19357978)
chr7 (182-250)||(19722018-19722086)
chr7 (200-256)||(22080862-22080918)
chr7 (182-250)||(29899374-29899442)
chr7 (180-239)||(19645630-19645689)
chr7 (184-275)||(36260228-36260319)
chr7 (184-258)||(13888098-13888172)
chr7 (182-228)||(19374778-19374824)
chr7 (184-250)||(21218712-21218778)
chr7 (170-248)||(24002201-24002279)
chr7 (196-293)||(26256732-26256829)
chr7 (196-292)||(15508704-15508800)
chr7 (203-239)||(20133340-20133376)
chr7 (203-239)||(20140841-20140877)
[»] chr4 (18 HSPs)
chr4 (171-293)||(53774797-53774919)
chr4 (180-293)||(3565701-3565814)
chr4 (180-256)||(11970982-11971058)
chr4 (180-256)||(3557720-3557796)
chr4 (180-256)||(11981683-11981759)
chr4 (180-288)||(3560958-3561066)
chr4 (180-293)||(8443454-8443567)
chr4 (184-257)||(837769-837842)
chr4 (185-251)||(35767017-35767083)
chr4 (179-256)||(6372439-6372516)
chr4 (181-250)||(53430100-53430169)
chr4 (180-244)||(1686285-1686349)
chr4 (181-256)||(6392815-6392893)
chr4 (182-226)||(53790577-53790621)
chr4 (180-239)||(6113090-6113149)
chr4 (218-293)||(10475164-10475239)
chr4 (220-293)||(10464226-10464299)
chr4 (174-250)||(10468042-10468118)
[»] chr2 (8 HSPs)
chr2 (170-276)||(14514874-14514980)
chr2 (182-256)||(18908811-18908885)
chr2 (182-256)||(18920767-18920841)
chr2 (182-255)||(18913559-18913632)
chr2 (180-255)||(554471-554546)
chr2 (196-251)||(20975557-20975612)
chr2 (196-250)||(25698507-25698561)
chr2 (180-252)||(25377072-25377144)
[»] chr5 (8 HSPs)
chr5 (182-293)||(29647633-29647744)
chr5 (170-302)||(18964820-18964952)
chr5 (182-256)||(29597554-29597628)
chr5 (182-261)||(29642348-29642427)
chr5 (181-256)||(24330900-24330975)
chr5 (19-64)||(18964675-18964720)
chr5 (199-248)||(23086784-23086833)
chr5 (187-255)||(28763912-28763980)
[»] chr1 (9 HSPs)
chr1 (179-250)||(4570927-4570998)
chr1 (179-251)||(50645484-50645556)
chr1 (181-256)||(21855384-21855459)
chr1 (181-247)||(4014966-4015032)
chr1 (180-250)||(39379061-39379131)
chr1 (181-250)||(10218985-10219054)
chr1 (180-245)||(15961233-15961298)
chr1 (179-250)||(17560772-17560843)
chr1 (181-243)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (180-244)||(3625740-3625804)
chr3 (180-252)||(25901279-25901351)
chr3 (180-252)||(25915297-25915369)
chr3 (199-255)||(3837904-3837960)
[»] scaffold0354 (2 HSPs)
scaffold0354 (170-239)||(7474-7543)
scaffold0354 (19-103)||(7607-7691)
[»] scaffold0867 (1 HSPs)
scaffold0867 (180-276)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (170-268)||(27618473-27618571)
chr8 (196-248)||(29390288-29390340)
chr8 (216-256)||(42846461-42846501)
chr8 (196-248)||(11338592-11338644)
chr8 (196-248)||(11339435-11339487)
chr8 (196-248)||(11345117-11345169)
chr8 (181-225)||(29157073-29157117)
[»] scaffold0242 (2 HSPs)
scaffold0242 (187-256)||(13737-13806)
scaffold0242 (187-256)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (199-255)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 6921189 - 6921498
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  6921189 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcggaaaaacacattggtgtcaatcgag 6921288  T
Q  119 agcgatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaac 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921289 agcgatgaaataatgaatcattatataactccttagttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaac 6921388  T
Q  219 tccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921389 tccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgt 6921488  T
Q  319 agctcttcat 328  Q
    ||||||||||    
T  6921489 agctcttcat 6921498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 6942806 - 6943077
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 118  Q
    |||||||||||| |||||||||||||||| |||||| ||| |||||| |||||| |||||||||||||||||||||||||||||| |||  |||||| |     
T  6942806 ctattatctttcaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccattctcagaaaaacacaatggcctcaatccaa 6942905  T
Q  119 agcgatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaac 218  Q
      |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||    
T  6942906 gacgataaaataatgaatcattatagaactcctgaattttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaac 6943005  T
Q  219 tccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccat 290  Q
    ||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  6943006 tccaaattccttcatttgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaatccat 6943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 6954358 - 6954646
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 118  Q
    ||||||| |||  |||||||||||||||| |||||| ||| |||||| |||||| ||||||||||||||| || ||||||||||| |||  |||||||||    
T  6954358 ctattattttttaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccatccttagaaaaacacagtggcatcaatcgag 6954457  T
Q  119 agcgatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaac 218  Q
      | | ||||||||||||| ||||  ||||||||| |||||||||| ||||||||| ||| | ||||||||||||  |||||||||||||||||||||||    
T  6954458 gacaaagaaataatgaatcgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaac 6954557  T
Q  219 tccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttg 307  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||| ||| ||||||||||||||||||||||||||||||    
T  6954558 tccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttg 6954646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 6935073 - 6935366
Alignment:
Q  20 tattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgaga 119  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||||| |||||| |||||||||||||||| | |||||| |||| |||  |||||||||     
T  6935073 tattatctctccaattatagagaaatgcttggtctggtagattgattgcaaatatcaatgtatcaccattattagaaaagcacaatggaatcaatcgag- 6935171  T
Q  120 gcgatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaact 219  Q
      || || |            |||   ||| |||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  6935172 --gaggata------------ataggtctcgtgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaact 6935257  T
Q  220 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgta 319  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    |||||    
T  6935258 ccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgta 6935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 328
Target Start/End: Original strand, 6947760 - 6948028
Alignment:
Q  60 attgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagtttta 159  Q
    |||||| | |||| |||||||||||||||| | ||||||||||| |||  ||||| |||   ||| | |   || | ||||||  ||||| ||| |||||    
T  6947760 attgattgtaaatatcaatgtatcaccattgttagaaaaacacagtggaatcaattgaggaggataataggttggaccattatgaaactcatgaatttta 6947859  T
Q  160 aaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttct 259  Q
    | ||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  6947860 atatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttct 6947959  T
Q  260 tagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcat 328  Q
    |  ||||||  |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6947960 tgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcat 6948028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 20770720 - 20770594
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| |||  ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  280 aggcaatccatcaatacagaaagagtt 306  Q
    |  ||||||||||| ||| ||||||||    
T  20770620 atacaatccatcaacacacaaagagtt 20770594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 17369744 - 17369675
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  17369744 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 6947671 - 6947740
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccat 88  Q
    ||||||||| ||||||||||||||| ||| |||||||||| | |||| | |||| |||||||||||||||    
T  6947671 ctattatctctccaattatagagaaatgcttggtctggtagagtgattgtaaatatcaatgtatcaccat 6947740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 24254428 - 24254506
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 260  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctctt 24254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  186 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||||| ||||||| || ||||||||||| | | |||| | ||| ||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 52)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 1985794 - 1986103
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatctcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 118  Q
    ||||||||| ||| ||||||||||| ||| ||||||| |  |||||| |||||| ||||||||||||||||||| |||||| ||| ||| ||||||||||    
T  1985794 ctattatctctcctattatagagaaatgcttggtctgttggattgattgcaaatatcaatgtatcaccattctcggaaaaatacaatggagtcaatcgag 1985893  T
Q  119 agcgatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaac 218  Q
       ||| | |   || | ||||||  ||| | ||| |||||| ||| | |||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  1985894 gaggataataggttggaccattattgaacccatgaattttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaac 1985993  T
Q  219 tccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgt 318  Q
     |||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||    
T  1985994 gccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgt 1986093  T
Q  319 agctcttcat 328  Q
    || |||||||    
T  1986094 agatcttcat 1986103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 18514777 - 18514910
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 269  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||    
T  18514777 gaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcata 18514876  T
Q  270 agaaaaatagaggcaatccatcaatacagaaaga 303  Q
    ||||||| | | ||||||||| || |||||||||    
T  18514877 agaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 13416911 - 13417036
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  280 aggcaatccatcaatacagaaagagt 305  Q
    || |||||  |||| | |||||||||    
T  13417011 agacaatcattcaacatagaaagagt 13417036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 14076758 - 14076677
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076758 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 14386786 - 14386705
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386786 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 15571885 - 15572018
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 269  Q
    ||||||| | ||||||||||||| ||||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||  |||  |||||||    
T  15571885 gaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcata 15571984  T
Q  270 agaaaaatagaggcaatccatcaatacagaaaga 303  Q
    ||||||| | || |||||||| || |||||||||    
T  15571985 agaaaaacaaagacaatccataaacacagaaaga 15572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  168 tagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatca 267  Q
    ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || |||||   ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  268 taagaaaaatagaggcaatccatcaatacag 298  Q
    | ||||||| | ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaa 249  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 276  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| | | |||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 22021455 - 22021382
Alignment:
Q  187 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 260  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttctt 22021382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  ||  |||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  280 aggcaatcc 288  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 29867305 - 29867221
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 265  Q
    ||||||||| ||||||||||||||||||| |||||||| || |||| |||||||||||| |||| |||||  |||| ||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttccttagaat 29867221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 22028696 - 22028622
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 29881325 - 29881267
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    |||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 276  Q
    ||||||||||||||| ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||  ||| |||| ||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 276  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 244  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 29921980 - 29922063
Alignment:
Q  167 ttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    ||||||||||   |||||||||| |||||||||||| |||||| |||||| | ||||||| |||||| ||||| ||||||||||    
T  29921980 ttagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  203 tccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 260  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 20338993 - 20338917
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 257  Q
    ||||| |||| || || |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338993 taactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 22070189 - 22070110
Alignment:
Q  172 agattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    |||||| ||||||||||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  22070189 agattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatg 22070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 36263119 - 36263028
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 275  Q
    |||| ||||| || |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||| | |||| ||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaa 36263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 19325987 - 19326065
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 260  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctctt 19326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||||||   || |||| || |||| |||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||  |||||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 29859524 - 29859454
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 29431001 - 29431086
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 265  Q
    ||||||||||||||||||||| |||||||| |||| | | ||||||| | ||||  |||| |||||||||| ||| | ||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtccttagaat 29431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 29445663 - 29445732
Alignment:
Q  187 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||| || |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 292  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | || ||||||||||||||| | || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 254  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  200 gagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 19645630 - 19645689
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgcca 19645689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 36260319 - 36260228
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 275  Q
    ||||||||||  | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||  |||||| ||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 13888098 - 13888172
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttc 258  Q
    |||| ||||||||||||||||||||| | |||  |||||||||   |||||| ||| |||||||||| |||||||    
T  13888098 ctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttttc 13888172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 19374824 - 19374778
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattcc 228  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 21218712 - 21218778
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||| ||| ||||||||||||||||| |  ||| ||||||||||| |||||||||| ||||| ||||    
T  21218712 ctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaat 21218778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 24002279 - 24002201
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    ||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||  | |||||||| ||||| | ||||||    
T  24002279 gaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 26256829 - 26256732
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 293  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||| | ||||||||   ||| ||| | ||||| ||||||| | ||||| ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 15508800 - 15508704
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 292  Q
    |||||||||| ||| | |||||||||| | |||||||| ||||| | ||||||    ||||| || ||||||||||||||| | || ||||||||||    
T  15508800 aattgagtcctagactattcaactccatactccttcatatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatca 15508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  203 tccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  203 tccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  171 aagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataa 270  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  271 gaaaaatagaggcaatccatcaa 293  Q
    |||||| | |  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  280 aggcaatccatcaa 293  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||| |||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  280 aggcaatcc 288  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 279  Q
    ||||||||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| |||||| |||| ||| ||||  |||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  280 aggcaatccatcaa 293  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  184 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 257  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 35767083 - 35767017
Alignment:
Q  185 taattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 6372516 - 6372439
Alignment:
Q  179 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372516 tataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    ||||||||||||||||||||||||||||| |||||  | ||| ||| |||||| ||||| || |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 1686285 - 1686349
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 244  Q
    |||||||  |||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 6392893 - 6392815
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca---gataacaaaatgggttt 256  Q
    |||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||   ||| |||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggttt 6392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 53790621 - 53790577
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaatt 226  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 6113149 - 6113090
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||||||  |||||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  6113149 ataactaattcgaaggaactgagtccaagactctttaactccaaattccatcattcgcca 6113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  218 ctccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 293  Q
    ||||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 10464299 - 10464226
Alignment:
Q  220 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 293  Q
    ||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10464299 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 10468118 - 10468042
Alignment:
Q  174 attcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||| ||||| |||||||||  |||||| |||||||    | ||||||||| |||||||||||||| ||||||||||    
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 14514980 - 14514874
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 269  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||||||  |||||||    
T  14514980 gaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcata 14514881  T
Q  270 agaaaaa 276  Q
    |||||||    
T  14514880 agaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 255  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 554546 - 554471
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 255  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 252  Q
    ||||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagag 281  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| |||||||||  ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  282 gcaatccatcaa 293  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 18964820 - 18964952
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 269  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | |  |||||     
T  18964820 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatg 18964919  T
Q  270 agaaaaatagaggcaatccatcaatacagaaag 302  Q
    || |||| | ||||||| |||||||||| ||||    
T  18964920 agtaaaacaaaggcaattcatcaatacacaaag 18964952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 29597554 - 29597628
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  182 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 261  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 18964675 - 18964720
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtatattga 64  Q
    ||||||||| ||||||||||||||||||| ||||||  ||||||||    
T  18964675 ctattatctctccaattatagagaattgcttggtctcttatattga 18964720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  199 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 28763912 - 28763980
Alignment:
Q  187 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 255  Q
    ||||| |||||| || ||||||| | |||||||||||||| | |||| | ||| |||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  179 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 50645484 - 50645556
Alignment:
Q  179 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 251  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaa 247  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    |||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataac 245  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 17560772 - 17560843
Alignment:
Q  179 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 250  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||| ||||| ||||| ||||    
T  17560772 tataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 4016773 - 4016835
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagata 243  Q
    ||||||| |||||  || |||||||| || |||||||||||||||| |||||| |||||||||    
T  4016773 taactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagata 4016835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 244  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 252  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 252  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  199 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 255  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 7543 - 7474
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 239  Q
    ||||||||  ||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  7543 gaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 7691 - 7607
Alignment:
Q  19 ctattatctttccaattatagagaattgcctggtctggtat-attgatagcaaatctcaatgtatcaccattctcagaaaaacaca 103  Q
    ||||||||| || ||||||||| ||||||  |||||| ||| |||| | |||||| ||||||||||||||||||| |||| |||||    
T  7691 ctattatctctcaaattatagacaattgctaggtctg-tatgattggttgcaaatatcaatgtatcaccattctcggaaacacaca 7607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  180 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 276  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 27618571 - 27618473
Alignment:
Q  170 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcat 268  Q
    ||||||||  |||||||| |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| |||| |||| ||||||    
T  27618571 gaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcat 27618473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  216 aactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 11339435 - 11339487
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaa 11339487  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 11345117 - 11345169
Alignment:
Q  196 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 248  Q
    ||||||||||||||||||| || |||||| || | ||||||||| ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaa 11345169  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 29157117 - 29157073
Alignment:
Q  181 taactaattttaaggaattgagtccaagattcttcaactccaaat 225  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaat 29157073  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 13737 - 13806
Alignment:
Q  187 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  13737 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 13806  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 22572 - 22641
Alignment:
Q  187 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 256  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  22572 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 22641  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  199 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 255  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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