View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_13 (Length: 301)
Name: NF17401_low_13
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 41968670 - 41968854
Alignment:
| Q |
126 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaa---catta---------taaagaattaatggaacccttttgtacattgat |
213 |
Q |
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| T |
41968670 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaataacattaaaaaggatataaagaattaatggaacccttttgtacattgat |
41968769 |
T |
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| Q |
214 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcctcc |
298 |
Q |
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| T |
41968770 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcaattcttagatctctcctcctcc |
41968854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41968551 - 41968621
Alignment:
| Q |
1 |
gtcactggagctggtggagttgtgggagttgcaggagtttctggagttgaatctgaagctgtagttgaagt |
71 |
Q |
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| T |
41968551 |
gtcactggagctggtggagttgtcggagttgcaggagtttctggagttgaatctgaagctgtagttgaagt |
41968621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 1235723 - 1235782
Alignment:
| Q |
126 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaacattataaag |
185 |
Q |
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| T |
1235723 |
ctcaatggtagctcctattatatgagcctgaaataaaatcattcatgtaacattaaaaag |
1235782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1235589 - 1235637
Alignment:
| Q |
1 |
gtcactggagctggtggagttgtgggagttgcaggagtttctggagttg |
49 |
Q |
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| T |
1235589 |
gtcaccggagctggtggagttgtcggagttgctggagtttctggagttg |
1235637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 1235630 - 1235673
Alignment:
| Q |
15 |
tggagttgtgggagttgcaggagtttctggagttgaatctgaag |
58 |
Q |
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| T |
1235630 |
tggagttgttggagttaccggagtttctggagttgaatctgaag |
1235673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 29522024 - 29521956
Alignment:
| Q |
230 |
aattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcctcc |
298 |
Q |
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| T |
29522024 |
aattttggtcatcacctcttctttatttacagttcattactccttcaattcctagatctctcctcctcc |
29521956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 35739589 - 35739644
Alignment:
| Q |
231 |
attttggtcatcacctcttctttatttacagttcattactagttcagttcttagat |
286 |
Q |
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| T |
35739589 |
attttggtcatcacctcttctttctttacggttcattactccttcaattcttagat |
35739644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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