View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_18 (Length: 256)
Name: NF17401_low_18
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1025945 - 1025834
Alignment:
| Q |
1 |
attatactcagcactatcttgccaccttaaatttatcgtagaaaattacactagacattcaaaagtgaataagactttcaaataaaaatatatttggata |
100 |
Q |
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| T |
1025945 |
attatactcagcactatcttgccaccttaaatttatcgtagaaaattacactagacattcaaaagtgaataagactttcaaataaaaatatatttggata |
1025846 |
T |
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| Q |
101 |
catatacataga |
112 |
Q |
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|||||||||||| |
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| T |
1025845 |
catatacataga |
1025834 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 1025731 - 1025695
Alignment:
| Q |
205 |
atttgaaagtgtgaccatcgaaaactttagtgaaaac |
241 |
Q |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
1025731 |
atttgaaagtgtgactatcgaaaactttagtgaaaac |
1025695 |
T |
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