View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_19 (Length: 255)
Name: NF17401_low_19
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_19 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 12225 - 12453
Alignment:
| Q |
15 |
tcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaacta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12225 |
tcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaacta |
12324 |
T |
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| Q |
115 |
atttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatg |
214 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
12325 |
atttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatg |
12424 |
T |
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| Q |
215 |
ccaaaatcagctatcttaggattcatctc |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12425 |
ccaaaatcagctatcttaggattcatctc |
12453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 4737 - 4829
Alignment:
| Q |
147 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4737 |
cttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat |
4829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 6510545 - 6510773
Alignment:
| Q |
15 |
tcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaacta |
114 |
Q |
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| T |
6510545 |
tcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaacta |
6510644 |
T |
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| Q |
115 |
atttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatg |
214 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6510645 |
atttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatg |
6510744 |
T |
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| Q |
215 |
ccaaaatcagctatcttaggattcatctc |
243 |
Q |
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| T |
6510745 |
ccaaaatcagctatcttaggattcatctc |
6510773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 6503057 - 6503150
Alignment:
| Q |
147 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6503057 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat |
6503150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 6515066 - 6515161
Alignment:
| Q |
146 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatc |
241 |
Q |
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| T |
6515066 |
acttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc |
6515161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 6497722 - 6497816
Alignment:
| Q |
146 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
240 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
6497722 |
acttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcat |
6497816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 6514947 - 6515039
Alignment:
| Q |
18 |
ggtgccatatatccactacaaaacaatatggg-agttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcata |
109 |
Q |
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||||||||||| |||||||| |||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6514947 |
ggtgccatatacccactacataacaatatggatagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcata |
6515039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 6525438 - 6525341
Alignment:
| Q |
146 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctc |
243 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| || || |||||||||||||| |||||||||||||||||||| |
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| T |
6525438 |
acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc |
6525341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 6497562 - 6497591
Alignment:
| Q |
15 |
tcaggtgccatatatccactacaaaacaat |
44 |
Q |
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| T |
6497562 |
tcaggtgccatatatccactacaaaacaat |
6497591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 28828947 - 28829041
Alignment:
| Q |
146 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
240 |
Q |
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|||||||| ||||| ||||||||| |||| ||| | || ||||| || ||| || || ||||||||||||||||| |||||||||| |||||| |
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| T |
28828947 |
acttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcat |
28829041 |
T |
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