View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_2 (Length: 496)
Name: NF17401_low_2
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 25883565 - 25883105
Alignment:
| Q |
16 |
tgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttcttctgaagat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
25883565 |
tgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagcgggggcgaaaagcagtcttcttctgaagat |
25883466 |
T |
|
| Q |
116 |
caatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatatttcacggaag |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25883465 |
caatccaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatatttcacagaag |
25883366 |
T |
|
| Q |
216 |
catttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttgcaactgcaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883365 |
catttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcatcatttttggctggtgattattggctagcatttgcaactgcaga |
25883266 |
T |
|
| Q |
316 |
tgattctagcattctttcttctactttcatttctgtctatgctgtattagctgttgttgcatgcatagtttttatggtaagaggtttcttgttgacatat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
25883265 |
tgattctagcattctttcttctactttcattactgtctatgctgtaatagctgttgttgcatgcatagttgttatggtaagaggtttcttgtttacatat |
25883166 |
T |
|
| Q |
416 |
gtgggttcaaagacctctcaaagcttcttcattggaatgcttcactgtatccctcatgcac |
476 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
25883165 |
ttgggtttaaagacatctcaaagcttcttcattggaatgcttcaatgtatccttcatgcac |
25883105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 14318145 - 14317688
Alignment:
| Q |
16 |
tgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttcttctgaagat |
115 |
Q |
| |
|
|||||||||||| |||| || ||||| |||| |||| ||||||||||| | ||||||||||||||||| | | ||||||||||||||| || |||| |
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| T |
14318145 |
tgataaaactagcgatgaatctgctcagtctccaaaattagctcgcatcgcttcgaaagaaaaagaaagcgcgctagaaaagcagtcttct-ct--agat |
14318049 |
T |
|
| Q |
116 |
caatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatatttcacggaag |
215 |
Q |
| |
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|| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||| |||||||| |||| |
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| T |
14318048 |
aaacctaagtctgataaaactgcagcaaagctcattgaagacgaggaaagagaaactggacgtgtaaaccttaaagtatacaaacattatttcacagaag |
14317949 |
T |
|
| Q |
216 |
catttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttgcaactgcaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
14317948 |
catttggatggtggggaatagcactcatggtagcaatgtcagtggcttggatgctgtcatttttggctggtgattattggctagcaattgctactgcaga |
14317849 |
T |
|
| Q |
316 |
tgattctagcattctttcttctactttcatttctgtctatgctgtattagctgttgttgcatgcatagtttttatggtaagaggtttcttgttgacatat |
415 |
Q |
| |
|
||||||| |||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||| | ||||||| || ||| |
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| T |
14317848 |
tgattctggcattccttctttcactttcattactgtctatgctgttatagctgttgttgcatgcatagttgttatggtgagagctctcttgtttacttat |
14317749 |
T |
|
| Q |
416 |
gtgggttcaaagacctctcaaagcttcttcattggaatgcttcactgtatccctcatgcac |
476 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||| |||||| ||| |||| |
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|
| T |
14317748 |
tggggtttaaagacatctcaaagcttcttcattggattgcttcaaagtatccttcacgcac |
14317688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 476
Target Start/End: Complemental strand, 14279966 - 14279514
Alignment:
| Q |
21 |
aaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttcttctgaagatcaatc |
120 |
Q |
| |
|
|||| ||| ||||||| |||||||||| |||||| || | ||| | |||| |||||||||||| | || |||||| |||||||| ||||| |||| |
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|
| T |
14279966 |
aaacaagtgatgattctgctcaatctccaaaactggcccacatttcttcgagagaaaaagaaagcgcggtagaaaagaagtcttctc---aagataaatc |
14279870 |
T |
|
| Q |
121 |
gaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatatttcacggaagcattt |
220 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
14279869 |
taagtctaataaaactgcagcaaagctcattgaagatgaggaaagagaaactggacgtgtaaaccttaaagtatacaaacattatttcacagaagcattt |
14279770 |
T |
|
| Q |
221 |
ggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttgcaactgcagatgatt |
320 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
14279769 |
ggatggtggggaatagcactcatggtagcaatgtcagtggcttgtatgctgtcaactttggttggcgattattggctagcaactgcaactgcagatgatt |
14279670 |
T |
|
| Q |
321 |
ctagcattctttcttctactttcatttctgtctatgctgtattagctgttgttgcatgcatagtttttatggtaagaggtttcttgttgacatatgtggg |
420 |
Q |
| |
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|| | |||| |||||| ||||||||| ||||||||||||| |||||||||||| |||||||||| ||||| | |||| | ||||||| || ||| ||| |
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| T |
14279669 |
ctggaattccttcttccactttcattactgtctatgctgttatagctgttgttgtatgcatagttgttatgttgagagctctcttgtttacttattgggg |
14279570 |
T |
|
| Q |
421 |
ttcaaagacctctcaaagcttcttcattggaatgcttcactgtatccctcatgcac |
476 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||||||| |||||| |||||||| |
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|
| T |
14279569 |
tttaaagacatctcaaagcttcttcgttggaatgcttcaaagtatccttcatgcac |
14279514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 14301718 - 14301268
Alignment:
| Q |
20 |
aaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttcttctgaagatcaat |
119 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||| || ||| || || |||||||||||||| || | |||| ||||||||| || ||||| |
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|
| T |
14301718 |
aaaactagtgatgattccgctcaatctccaaaactcgcccgcgtcatttcaaaagaaaaagaaagcggag---aaaaacagtcttctc---aaattcaat |
14301625 |
T |
|
| Q |
120 |
cgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatatttcacggaagcatt |
219 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||| |||||||| |
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|
| T |
14301624 |
ccaagtctgataaaactgcagcaaagctcattgaagatgaggaaagagaaattggacaagtgaatcttgaagtatacaaacaatatttcacagaagcatt |
14301525 |
T |
|
| Q |
220 |
tggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttgcaactgcagatgat |
319 |
Q |
| |
|
||||||||||||| ||||| | || ||||| | || || | |||| | ||||||||||| | ||||||||||||||||| |||| |||||||||||| |
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|
| T |
14301524 |
tggatggtggggagtagcattaatggtagcagtatcagtagtttggatgctgtcatttttggttagtgattattggctagcaattgctactgcagatgat |
14301425 |
T |
|
| Q |
320 |
tctagcattctttcttctactttcatttctgtctatgctgtattagctgttgttgcatgcatagtttttatggtaagaggtttcttgttgacatatgtgg |
419 |
Q |
| |
|
||| | || ||||| ||||||||| ||||||||||||| |||||||||| |||| ||||| |||||| ||||| |||||| || |||||| || |
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|
| T |
14301424 |
tctgccgtttcttctttcactttcattactgtctatgctgttatagctgttgtgtcatgtatagtggttatggcaagagctttcttttttacatattggg |
14301325 |
T |
|
| Q |
420 |
gttcaaagacctctcaaagcttcttcattggaatgcttcactgtatccctcatgcac |
476 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
14301324 |
gtttaaagacatctcaaagcttcttcgttggaatgcttcaaagtatccttcatgcac |
14301268 |
T |
|
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