View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17401_low_21 (Length: 238)

Name: NF17401_low_21
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17401_low_21
NF17401_low_21
[»] chr3 (5 HSPs)
chr3 (1-164)||(49137117-49137280)
chr3 (174-218)||(44352294-44352338)
chr3 (174-218)||(54536723-54536767)
chr3 (175-218)||(20553147-20553190)
chr3 (175-218)||(44052525-44052568)
[»] chr8 (2 HSPs)
chr8 (173-218)||(9599901-9599946)
chr8 (175-218)||(28395369-28395412)
[»] chr2 (2 HSPs)
chr2 (175-218)||(1285229-1285272)
chr2 (178-218)||(1194909-1194949)
[»] chr1 (1 HSPs)
chr1 (175-218)||(27242471-27242514)
[»] chr7 (3 HSPs)
chr7 (175-218)||(9356442-9356485)
chr7 (175-218)||(46072212-46072255)
chr7 (175-209)||(23559184-23559218)
[»] chr4 (3 HSPs)
chr4 (177-218)||(17625040-17625081)
chr4 (175-209)||(49228070-49228104)
chr4 (174-218)||(20614054-20614097)
[»] chr5 (1 HSPs)
chr5 (175-207)||(9370956-9370988)
[»] chr6 (1 HSPs)
chr6 (175-218)||(15599581-15599623)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 49137117 - 49137280
Alignment:
Q  1 caccttaacacataatcgctgcttggtaatataataagtgcagcttaataatataataacaacaatactagtaagaggtccaacgatcttttgagaaatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49137117 caccttaacacataatcgctgcttgataatataataagtgcagcttaataatataataacaacaatactagtaagaggtccaacgatcttttgagaaatt 49137216  T
Q  101 ttgaatagttttgaagtgttggttcagcgcagaatttgtcatgttttggaaaacaaacaaggtg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49137217 ttgaatagttttgaagtgttggttcagcgcagaatttgtcatgttttggaaaacaaacaaggtg 49137280  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 44352338 - 44352294
Alignment:
Q  174 ccagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44352338 ccagtggcggatcttgccgaaaatattggggggagcggtaaatat 44352294  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 54536723 - 54536767
Alignment:
Q  174 ccagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54536723 ccagtggcggatcttgccgaaaatattggggggagcggtaaatat 54536767  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 20553147 - 20553190
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20553147 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 20553190  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 44052525 - 44052568
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44052525 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 44052568  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 9599901 - 9599946
Alignment:
Q  173 accagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9599901 accagtggcggatcttgccgaaaatattggggggagcggtaaatat 9599946  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 28395369 - 28395412
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28395369 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 28395412  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 1285229 - 1285272
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1285229 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 1285272  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 1194909 - 1194949
Alignment:
Q  178 tggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1194909 tggcggatcttgccgaaaatattggggggagcggtaaatat 1194949  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 27242471 - 27242514
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27242471 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 27242514  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 9356442 - 9356485
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  9356442 cagtggcggatcttgtcgaaaatattggggggagcggtaaatat 9356485  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 46072255 - 46072212
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||    
T  46072255 cagtggtggatcttgccgaaaatattggagggtgcggtaaatat 46072212  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 23559184 - 23559218
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagc 209  Q
    ||||||||||||||||| |||||||||||||||||    
T  23559184 cagtggcggatcttgcccaaaatattggggggagc 23559218  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 17625040 - 17625081
Alignment:
Q  177 gtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  17625040 gtggcggatcttgccgaaaatattggggggaagggtaaatat 17625081  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 49228104 - 49228070
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagc 209  Q
    ||||||||||||||||| |||||||||||||||||    
T  49228104 cagtggcggatcttgcccaaaatattggggggagc 49228070  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 20614054 - 20614097
Alignment:
Q  174 ccagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||    
T  20614054 ccagtggcggatcttggcgaaaatattgggggta-cggtaaatat 20614097  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 9370988 - 9370956
Alignment:
Q  175 cagtggcggatcttgccgaaaatattgggggga 207  Q
    |||||||||||||||||||||||||||||||||    
T  9370988 cagtggcggatcttgccgaaaatattgggggga 9370956  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 15599623 - 15599581
Alignment:
Q  175 cagtggcggatcttgccgaaaatattggggggagcggtaaatat 218  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  15599623 cagtggcggatcttgccgaaaatattg-ggggtgcggtaaatat 15599581  T

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