View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_22 (Length: 217)
Name: NF17401_low_22
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 33015794 - 33015976
Alignment:
| Q |
18 |
tcatcatacattggccatgccagcttgtttctcaaaccgatccaccaatttccaccaacaataacacaaaggttatccccagccctgtcaccgtgaccnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33015794 |
tcatcatacattggccatgccagcttgtttctcaaaccgatccaccaatttccaccaacaataacacaaaggttatccctagccctgtcaccgtgaccaa |
33015893 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnncgtttgcacaagctcttagcaatgtttgtgatgttccaatcagttagttacctcaaccatgcaaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33015894 |
aaaacaacaaaaaaacgtttgcacaagctcttagcaatgtttgtgatgttccaatcagttagttacctcatccatgcaaaaaa |
33015976 |
T |
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