View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17401_low_3 (Length: 494)
Name: NF17401_low_3
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_3 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 259 - 494
Target Start/End: Original strand, 49136587 - 49136824
Alignment:
| Q |
259 |
tgaactggtaccatcagataaattgagagtttggtatggcatttgcacatgtaaaatcatgcagaaaatcacgttactggagaagctatgttttccagct |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49136587 |
tgaactggtaccatcagataaattgagagtttggtatggcgtttgcacatgtaaaatcatgcagaaaatcacgttactggagaagctatgttttccagct |
49136686 |
T |
|
| Q |
359 |
tttgctttttcactgcaattggtctttgagacaaacattgcaccgctaaacc--acaggcaatgaaatcaaatggatcactagttaggttaatgattgta |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49136687 |
tttgctttttcactgcaattggtctttgagacaaacattgcaccgctaaaccaaacaggcaatgaaatcaaatggatcactagttaggttaatgattgta |
49136786 |
T |
|
| Q |
457 |
aatgtctattttgtacatgtatcttatacaaatgcaaa |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49136787 |
aatgtctattttgtacatgtatcttatacaaatgcaaa |
49136824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 49136329 - 49136509
Alignment:
| Q |
1 |
ggaaggccctagcatgccagatgcgtacaatatatcactttgatcaattgctttcagtaaaccgaaaatcactcaaaataccaaatgacaacatatgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49136329 |
ggaaggccctagcatgccagatgcgtacaatagatcactttgatcaattgctttcagtaaaccgaaaatcactcaaaataccaaatgacaacctatgttc |
49136428 |
T |
|
| Q |
101 |
ttctttaaagtagaagctcgtggtcatatttgtttatcacgagtgggatgatgttcgacaaaaataaaggaaatgaattga |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49136429 |
ttctttaaagtagaagctcgtggtcatatttgtttatcacgagtgggatgattttcgacaaaaataaaggaaatgaattga |
49136509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 54592837 - 54592770
Alignment:
| Q |
323 |
aaaatcacgttactggagaagctatgttttccagcttttgctttttcactgcaattggtctttgagac |
390 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||| || |||| |||||| |||||| |||| |
|
|
| T |
54592837 |
aaaatcacgttatcgtagaagctatgttttccagcttctgccttctcacggcaattagtcttttagac |
54592770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 391
Target Start/End: Complemental strand, 7443568 - 7443465
Alignment:
| Q |
289 |
ttggtatggcatttgcacatgtaaaatcatg-cagaaaatcacgttactggagaagctatgttttccagcttttgctttttcactgcaattggtctttga |
387 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||||||||||| |||||| ||||||| ||||| || ||||||| | | ||||||||||| |
|
|
| T |
7443568 |
ttggtatggctttggcacatgtaaaatcgtgacagaaaatcacgttaccttagaagccatgttttttagcttatgtcttttcacggtatttggtctttga |
7443469 |
T |
|
| Q |
388 |
gaca |
391 |
Q |
| |
|
|||| |
|
|
| T |
7443468 |
gaca |
7443465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University