View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_7 (Length: 422)
Name: NF17401_low_7
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 39630998 - 39631408
Alignment:
| Q |
16 |
atgtgcttctcaattagatcaaagtctcatatctaccacatcttgtttttaaaatatcttcgaaaatgcatatgcatcacgaggatgacaataataatat |
115 |
Q |
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| T |
39630998 |
atgtgcttctcaattagatcaaagtctcatatctaccacatcttgtttttaaaatatcttcgaaaatgcatatgcatcacgaggatgacaataataatat |
39631097 |
T |
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| Q |
116 |
tttgtcatgtactccatccagattcagttcacaagtcatttttctttgcttaaagaatcgaggaaacgaagcttttaaatcctaataacgaaataagtac |
215 |
Q |
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| T |
39631098 |
tttgtcatgtactccatccagattcagttcacaagtcatttttctttgcttaaagaatcgaggaaacgaagcttttaaatcctaataacgaaataagtac |
39631197 |
T |
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| Q |
216 |
taggaacttggttgcttgtccacgactataggatataaattaattaaactttctttggtttcataattgaaataaagtactggagacaacaagccaaaga |
315 |
Q |
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| T |
39631198 |
taggaacttggttgcttgtccacaactataggatataaattaattaaactttctttggtttcataattgaaataaagtactggagacaacaagccaaaga |
39631297 |
T |
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| Q |
316 |
ttccacttgatttttagtatat----atctacaagtttgtcacttgatttcagttggataaattggactctatagtttatttgttcctatgactgcaacc |
411 |
Q |
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| T |
39631298 |
ttccacttgatttttagtatatctacaactacaagtatgtcacatgatttcagttggacaaattggactctatagtttatttgttcctatgactgccacc |
39631397 |
T |
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| Q |
412 |
agctatgaatg |
422 |
Q |
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| T |
39631398 |
agatatgaatg |
39631408 |
T |
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