View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_8 (Length: 387)
Name: NF17401_low_8
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 1030631 - 1030268
Alignment:
| Q |
14 |
caatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030631 |
caatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgcc |
1030532 |
T |
|
| Q |
114 |
ccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgcc |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030531 |
ccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgcc |
1030432 |
T |
|
| Q |
214 |
ctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaac |
313 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030431 |
ctaatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaac |
1030332 |
T |
|
| Q |
314 |
ctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcat |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030331 |
ctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcat |
1030268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 40833072 - 40832866
Alignment:
| Q |
166 |
tctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaa |
265 |
Q |
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| T |
40833072 |
tctcaagaccatgcttcaatgtgatatttaccacacttttctaatgccctaatccatctaactgcatcttcttttgaaacatcattttctttagatacaa |
40832973 |
T |
|
| Q |
266 |
tttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccact |
365 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |
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| T |
40832972 |
tttcctcaaaagctgatgttacatctgtaggcattttggttaatgaacctgctatataaacagaagctccctcagctaataagttccaaacccttccact |
40832873 |
T |
|
| Q |
366 |
gtgttcc |
372 |
Q |
| |
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||||||| |
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| T |
40832872 |
gtgttcc |
40832866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 46554221 - 46553858
Alignment:
| Q |
14 |
caatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554221 |
caatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgct |
46554122 |
T |
|
| Q |
114 |
ccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgcc |
213 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554121 |
ccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgcc |
46554022 |
T |
|
| Q |
214 |
ctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaac |
313 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554021 |
ctaatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaac |
46553922 |
T |
|
| Q |
314 |
ctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcat |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46553921 |
ctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcat |
46553858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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